• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用分子动力学模拟和谱聚类检测液-液相分离。

Detecting Liquid-Liquid Phase Separations Using Molecular Dynamics Simulations and Spectral Clustering.

机构信息

Institute for Computational Molecular Science, Temple University, Philadelphia, Pennsylvania 19122, United States.

Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, United States.

出版信息

J Phys Chem B. 2023 Apr 27;127(16):3682-3689. doi: 10.1021/acs.jpcb.3c00805. Epub 2023 Apr 13.

DOI:10.1021/acs.jpcb.3c00805
PMID:37053472
Abstract

A stringent test of the accuracy of empirical force fields is reproducing the phase diagram of bulk phases and mixtures. Exploring the phase diagram of mixtures requires the detection of phase boundaries and critical points. In contrast to most solid-liquid transitions, in which a global order parameter (average density) can be used to discriminate between two phases, some demixing transitions entail relatively subtle changes in the local environment of each molecule. In such cases, finite sampling errors and finite-size effects make the identification of trends in local order parameters extremely challenging. Here we analyze one such example, namely a methanol/hexane mixture, and compute several local and global structural properties. We simulate the system at various temperatures and study the structural changes associated with demixing. We show that despite a seemingly continuous transformation between mixed and demixed states, the topological properties of the H-bond network change abruptly as the system crosses the demixing line. In particular, by using spectral clustering, we show that the distribution of cluster sizes develops a fat tail (as expected from percolation theory) in the vicinity of the critical point. We illustrate a simple criterion to identify this behavior, which results from the emergence of large system-spanning clusters from a collection of aggregates. We further tested the spectral clustering analysis on a Lennard-Jones system as a standard example of a system with no H-bonds, and also, in this case, we were able to detect the demixing transition.

摘要

对经验力场准确性的严格检验是再现体相和混合物的相图。探索混合物的相图需要检测相界和临界点。与大多数固-液相变不同,在固-液相变中,可以使用全局序参量(平均密度)来区分两个相,一些分相转变涉及到每个分子的局部环境的相对细微的变化。在这种情况下,有限的抽样误差和有限尺寸效应使得识别局部序参量的趋势变得极具挑战性。在这里,我们分析了这样一个例子,即甲醇/己烷混合物,并计算了几个局部和全局结构性质。我们在不同的温度下模拟系统,并研究与分相相关的结构变化。我们表明,尽管在混合态和分相态之间似乎存在连续的转变,但氢键网络的拓扑性质在系统穿过分相线时会突然发生变化。具体来说,通过使用谱聚类,我们表明,在临界点附近,簇大小的分布会出现胖尾(如从渗流理论所预期的那样)。我们说明了一个简单的准则来识别这种行为,这种行为源于从聚集体中出现的大系统跨越簇。我们还在 Lennard-Jones 系统上测试了谱聚类分析,作为没有氢键的系统的标准示例,并且在这种情况下,我们也能够检测到分相转变。

相似文献

1
Detecting Liquid-Liquid Phase Separations Using Molecular Dynamics Simulations and Spectral Clustering.使用分子动力学模拟和谱聚类检测液-液相分离。
J Phys Chem B. 2023 Apr 27;127(16):3682-3689. doi: 10.1021/acs.jpcb.3c00805. Epub 2023 Apr 13.
2
Structure and dynamics of binary liquid mixtures near their continuous demixing transitions.二元液体混合物在其连续 demixing 转变附近的结构与动力学。
J Chem Phys. 2016 Oct 7;145(13):134505. doi: 10.1063/1.4963771.
3
Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.在流行地区,服用抗叶酸抗疟药物的人群中,叶酸补充剂与疟疾易感性和严重程度的关系。
Cochrane Database Syst Rev. 2022 Feb 1;2(2022):CD014217. doi: 10.1002/14651858.CD014217.
4
On the phase and interface behavior along the three-phase line of ternary Lennard-Jones mixtures: a collaborative approach based on square gradient theory and molecular dynamics simulations.关于三元 Lennard-Jones 混合物三相线处的相和界面行为:一种基于平方梯度理论和分子动力学模拟的协同方法。
J Chem Phys. 2014 Jul 7;141(1):014503. doi: 10.1063/1.4885348.
5
Phase and interface behaviors in type-I and type-V Lennard-Jones mixtures: theory and simulations.I型和V型 Lennard-Jones 混合物中的相行为和界面行为:理论与模拟
J Chem Phys. 2005 Jul 15;123(3):34505. doi: 10.1063/1.1955529.
6
The phase behavior of two-dimensional symmetrical mixtures.二维对称混合物的相行为。
J Chem Phys. 2010 Dec 28;133(24):244501. doi: 10.1063/1.3511711.
7
Perfect wetting along a three-phase line: theory and molecular dynamics simulations.三相线上的完全润湿:理论与分子动力学模拟
J Chem Phys. 2006 Jun 28;124(24):244505. doi: 10.1063/1.2206772.
8
Phase and interfacial behavior of partially miscible symmetric Lennard-Jones binary mixtures.部分互溶对称 Lennard-Jones 二元混合物的相行为和界面行为
J Chem Phys. 2005 Nov 8;123(18):184507. doi: 10.1063/1.2102787.
9
Interplay between demixing and freezing in two-dimensional symmetrical mixtures.二维对称混合物中分层与冻结之间的相互作用。
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan;81(1 Pt 1):012501. doi: 10.1103/PhysRevE.81.012501. Epub 2010 Jan 15.
10
Phase diagram of symmetric binary fluid mixtures: first-order or second-order demixing.对称二元流体混合物的相图:一级或二级 demixing(此处demixing 可能是专业术语“分层”之类的意思,具体需结合专业背景确定准确含义)
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jun;65(6 Pt 1):061504. doi: 10.1103/PhysRevE.65.061504. Epub 2002 Jun 21.

引用本文的文献

1
Continuity of Short-Time Dynamics Crossing the Liquid-Liquid Phase Separation in Charge-Tuned Protein Solutions.电荷调控蛋白质溶液中跨越液-液相分离的短时动力学连续性
J Phys Chem Lett. 2024 Dec 5;15(48):12051-12059. doi: 10.1021/acs.jpclett.4c02533. Epub 2024 Nov 26.