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拟南芥烟酰胺合成酶包含一个共同的核心-NAS 结构域,融合到可变的自动抑制 C 末端。

Arabidopsis nicotianamine synthases comprise a common core-NAS domain fused to a variable autoinhibitory C terminus.

机构信息

Department of Molecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany.

Chemistry and Biochemistry of Natural Products Research Group, Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany.

出版信息

J Biol Chem. 2023 Jun;299(6):104732. doi: 10.1016/j.jbc.2023.104732. Epub 2023 Apr 21.

Abstract

Nicotianamine synthase (NAS) catalyzes the biosynthesis of the low-molecular-mass metal chelator nicotianamine (NA) from the 2-aminobutyrate moieties of three SAM molecules. NA has central roles in metal nutrition and metal homeostasis of flowering plants. The enzymatic function of NAS remains poorly understood. Crystal structures are available for archaeal and bacterial NAS-like proteins that carry out simpler aminobutanoyl transferase reactions. Here, we report amino acids essential for the activity of AtNAS1 based on structural modeling and site-directed mutagenesis. Using a newly developed enzyme-coupled continuous activity assay, we compare differing NAS proteins identified through multiple sequence alignments and phylogenetic analyses. In most NAS of dicotyledonous and monocotyledonous plants (class Ia and Ib), the core-NAS domain is fused to a variable C-terminal domain. Compared to fungal and moss NAS that comprise merely a core-NAS domain (class III), NA biosynthetic activities of the four paralogous Arabidopsis thaliana NAS proteins were far lower. C-terminally trimmed core-AtNAS variants exhibited strongly elevated activities. Of 320 amino acids of AtNAS1, twelve, 287-TRGCMFMPCNCS-298, accounted for the autoinhibitory effect of the C terminus, of which approximately one-third was attributed to N296 within a CNCS motif that is fully conserved in Arabidopsis. No detectable NA biosynthesis was mediated by two representative plant NAS proteins that naturally lack the C-terminal domain, class Ia Arabidopsis halleri NAS5 and Medicago truncatula NAS2 of class II which is found in dicots and diverged early during the evolution of flowering plants. Next, we will address a possible posttranslational release of autoinhibition in class I NAS proteins.

摘要

烟酰胺合成酶(NAS)催化低分子量金属螯合剂烟酰胺(NA)的生物合成,其前体为三个 SAM 分子的 2-氨基丁酸部分。NA 在开花植物的金属营养和金属稳态中具有核心作用。NAS 的酶促功能仍知之甚少。已有结构可用的古菌和细菌 NAS 样蛋白,它们执行更简单的氨丁酰基转移酶反应。在这里,我们根据结构建模和定点突变研究报告了 AtNAS1 活性所必需的氨基酸。使用新开发的酶偶联连续活性测定法,我们比较了通过多重序列比对和系统发育分析鉴定的不同 NAS 蛋白。在大多数双子叶植物和单子叶植物(IA 和 IB 类)的 NAS 中,核心-NAS 结构域融合到可变的 C 末端结构域。与仅包含核心-NAS 结构域的真菌和苔藓 NAS(III 类)相比,四个拟南芥 NAS 蛋白的 NA 生物合成活性要低得多。C 端修剪的核心 AtNAS 变体表现出强烈升高的活性。在 AtNAS1 的 320 个氨基酸中,12 个氨基酸(287-TRGCMFMPCNCS-298)导致 C 末端的自动抑制效应,其中约三分之一归因于 CNCS 基序内的 N296,该基序在拟南芥中完全保守。两个代表性的植物 NAS 蛋白自然缺乏 C 末端结构域,IA 类拟南芥 halleri NAS5 和 II 类豆科植物 Medicago truncatula NAS2,不能介导可检测的 NA 生物合成,而 II 类在开花植物进化的早期就已分化。接下来,我们将研究 I 类 NAS 蛋白中可能的翻译后自动抑制释放。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40af/10248798/babd096ba6fe/gr1.jpg

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