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发现高效小分子泛冠状病毒融合抑制剂。

Discovery of Highly Potent Small Molecule Pan-Coronavirus Fusion Inhibitors.

机构信息

Laboratory of Molecular Modeling and Drug Design, Lindsey F. Kimball Research Institute, New York Blood Center, New York, NY 10065, USA.

SRI Biosciences (A Division of SRI International), 333 Ravenswood Avenue, Menlo Park, CA 94025, USA.

出版信息

Viruses. 2023 Apr 19;15(4):1001. doi: 10.3390/v15041001.


DOI:10.3390/v15041001
PMID:37112982
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10141620/
Abstract

The unprecedented pandemic of COVID-19, caused by a novel coronavirus, SARS-CoV-2, and its highly transmissible variants, led to massive human suffering, death, and economic devastation worldwide. Recently, antibody-evasive SARS-CoV-2 subvariants, BQ and XBB, have been reported. Therefore, the continued development of novel drugs with pan-coronavirus inhibition is critical to treat and prevent infection of COVID-19 and any new pandemics that may emerge. We report the discovery of several highly potent small-molecule inhibitors. One of which, NBCoV63, showed low nM potency against SARS-CoV-2 (IC: 55 nM), SARS-CoV-1 (IC: 59 nM), and MERS-CoV (IC: 75 nM) in pseudovirus-based assays with excellent selectivity indices (SI > 900), suggesting its pan-coronavirus inhibition. NBCoV63 showed equally effective antiviral potency against SARS-CoV-2 mutant (D614G) and several variants of concerns (VOCs) such as B.1.617.2 (Delta), B.1.1.529/BA.1 and BA.4/BA.5 (Omicron), and K417T/E484K/N501Y (Gamma). NBCoV63 also showed similar efficacy profiles to Remdesivir against authentic SARS-CoV-2 (Hong Kong strain) and two of its variants (Delta and Omicron), SARS-CoV-1, and MERS-CoV by plaque reduction in Calu-3 cells. Additionally, we show that NBCoV63 inhibits virus-mediated cell-to-cell fusion in a dose-dependent manner. Furthermore, the absorption, distribution, metabolism, and excretion (ADME) data of NBCoV63 demonstrated drug-like properties.

摘要

由新型冠状病毒 SARS-CoV-2 及其高度传染性的变体引起的 COVID-19 疫情是前所未有的,给全球带来了巨大的人员痛苦、死亡和经济破坏。最近,已经报道了具有抗体逃逸能力的 SARS-CoV-2 亚变体 BQ 和 XBB。因此,继续开发具有泛冠状病毒抑制作用的新型药物对于治疗和预防 COVID-19 感染以及可能出现的任何新的大流行至关重要。我们报告了几种高活性小分子抑制剂的发现。其中,NBCoV63 在基于假病毒的测定中对 SARS-CoV-2(IC:55 nM)、SARS-CoV-1(IC:59 nM)和 MERS-CoV(IC:75 nM)具有低纳摩尔效力,具有出色的选择性指数(SI>900),表明其具有泛冠状病毒抑制作用。NBCoV63 对 SARS-CoV-2 突变体(D614G)和几种关注变体(VOC)如 B.1.617.2(Delta)、B.1.1.529/BA.1 和 BA.4/BA.5(Omicron)以及 K417T/E484K/N501Y(Gamma)同样具有有效的抗病毒效力。NBCoV63 对真实的 SARS-CoV-2(香港株)及其两种变体(Delta 和 Omicron)、SARS-CoV-1 和 MERS-CoV 的疗效与 Remdesivir 相似,通过 Calu-3 细胞中的蚀斑减少法测定。此外,我们表明 NBCoV63 以剂量依赖性方式抑制病毒介导的细胞间融合。此外,NBCoV63 的吸收、分布、代谢和排泄(ADME)数据表明其具有类药性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d214/10141620/43a0abd73ee8/viruses-15-01001-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d214/10141620/0f3b58617e8d/viruses-15-01001-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d214/10141620/43a0abd73ee8/viruses-15-01001-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d214/10141620/0f3b58617e8d/viruses-15-01001-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d214/10141620/43a0abd73ee8/viruses-15-01001-g002.jpg

相似文献

[1]
Discovery of Highly Potent Small Molecule Pan-Coronavirus Fusion Inhibitors.

Viruses. 2023-4-19

[2]
Discovery of Highly Potent Fusion Inhibitors with Potential Pan-Coronavirus Activity That Effectively Inhibit Major COVID-19 Variants of Concern (VOCs) in Pseudovirus-Based Assays.

Viruses. 2021-12-31

[3]
SARS-CoV-2 Omicron XBB subvariants exhibit enhanced fusogenicity and substantial immune evasion in elderly population, but high sensitivity to pan-coronavirus fusion inhibitors.

J Med Virol. 2023-3

[4]
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Antiviral Res. 2023-1

[5]
SARS-CoV-2 Omicron subvariants exhibit distinct fusogenicity, but similar sensitivity, to pan-CoV fusion inhibitors.

Emerg Microbes Infect. 2023-12

[6]
Emergency SARS-CoV-2 Variants of Concern: Novel Multiplex Real-Time RT-PCR Assay for Rapid Detection and Surveillance.

Microbiol Spectr. 2022-2-23

[7]
SARS-CoV-2 fusion-inhibitory lipopeptides maintain high potency against divergent variants of concern including Omicron.

Emerg Microbes Infect. 2022-12

[8]
High-throughput drug screening allowed identification of entry inhibitors specifically targeting different routes of SARS-CoV-2 Delta and Omicron/BA.1.

Biomed Pharmacother. 2022-7

[9]
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Antiviral Res. 2023-6

[10]
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Emerg Microbes Infect. 2023-12

引用本文的文献

[1]
Research Progress on Spike-Dependent SARS-CoV-2 Fusion Inhibitors and Small Molecules Targeting the S2 Subunit of Spike.

Viruses. 2024-4-30

[2]
Antiviral Protein-Protein Interaction Inhibitors.

J Med Chem. 2024-3-14

本文引用的文献

[1]
Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants.

Cell. 2023-1-19

[2]
Remdesivir Resistance in Transplant Recipients With Persistent Coronavirus Disease 2019.

Clin Infect Dis. 2023-1-13

[3]
Bad news for Paxlovid? Resistance may be coming.

Science. 2022-7-8

[4]
Revisiting COVID-19 vaccine hesitancy around the world using data from 23 countries in 2021.

Nat Commun. 2022-7-1

[5]
De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report.

Nat Commun. 2022-3-17

[6]
Discovery of Highly Potent Fusion Inhibitors with Potential Pan-Coronavirus Activity That Effectively Inhibit Major COVID-19 Variants of Concern (VOCs) in Pseudovirus-Based Assays.

Viruses. 2021-12-31

[7]
Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health Worker.

Front Med (Lausanne). 2021-8-20

[8]
Effects of common mutations in the SARS-CoV-2 Spike RBD and its ligand, the human ACE2 receptor on binding affinity and kinetics.

Elife. 2021-8-26

[9]
How the Delta variant achieves its ultrafast spread.

Nature. 2021-7-21

[10]
Delta variant: What is happening with transmission, hospital admissions, and restrictions?

BMJ. 2021-6-15

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