Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, School of Pharmaceutical Education & Research, Jamia Hamdard, New Delhi, India.
Department of Pharmacology, School of Pharmaceutical Education & Research, Jamia Hamdard, New Delhi, India.
J Biomol Struct Dyn. 2024 Feb-Mar;42(4):1858-1874. doi: 10.1080/07391102.2023.2205944. Epub 2023 May 2.
Coronavirus disease (COVID-19) is an infectious disease caused by the SARS-CoV-2 virus and dexamethasone is a glucocorticoid widely used for its treatment. Dexamethasone is not used in non-severe cases due to its immunosuppressant action. So, considering this, Estrogen and Estetrol were tested for the treatment of COVID-19 as they all possess a common steroid ring and dislike dexamethasone, they are immunoenhancer. Virtual screening of test ligands was performed through molecular docking, MM-GBSA, simulations, in silico ADMET and drug-likeness prediction to identify their potential to inhibit the effects of SARS-CoV-2. Results showed that test ligands possess drug-like properties and they are safe as drug candidates. The protein-ligand interaction study revealed that they bind with the amino acid residues at the active site of the target proteins and the test ligands possess better binding potential than Dexamethasone. With protein M, Estetrol and Estrogen showed docking score of -7.240 and -5.491 kcal/mol, and with protein ACE2, Estetrol and Estrogen showed docking score of -5.269 and -4.732 kcal/mol, respectively. Further, MD Simulation was carried out and most of the interactions of molecular docking are preserved during simulation. The prominent interactions that our test ligands showed during MD Simulation are similar to drugs that possess anticovid activity as shown in recent studies. Hence, our test ligands possessed potential for anticovid activity and they should be further tested through and studies for their activity against COVID-19.Communicated by Ramaswamy H. Sarma.
新型冠状病毒病(COVID-19)是由 SARS-CoV-2 病毒引起的传染病,地塞米松是一种广泛用于治疗的糖皮质激素。由于其免疫抑制作用,地塞米松不在非严重病例中使用。因此,考虑到这一点,测试了雌激素和雌三醇治疗 COVID-19,因为它们都具有共同的甾体环,并且不喜欢地塞米松,它们是免疫增强剂。通过分子对接、MM-GBSA、模拟、虚拟 ADMET 和药物相似性预测对测试配体进行虚拟筛选,以确定它们抑制 SARS-CoV-2 作用的潜力。结果表明,测试配体具有药物特性,并且作为候选药物是安全的。蛋白-配体相互作用研究表明,它们与靶蛋白活性部位的氨基酸残基结合,并且测试配体具有比地塞米松更好的结合潜力。与蛋白 M 结合时,雌三醇和雌激素的对接得分为-7.240 和-5.491 kcal/mol,与蛋白 ACE2 结合时,雌三醇和雌激素的对接得分为-5.269 和-4.732 kcal/mol。此外,还进行了 MD 模拟,并且在模拟过程中保持了分子对接的大多数相互作用。在 MD 模拟中,我们的测试配体表现出的突出相互作用与最近研究中具有抗新冠病毒活性的药物相似。因此,我们的测试配体具有抗新冠病毒活性的潜力,应该通过临床前和临床试验进一步测试它们对 COVID-19 的活性。由 Ramaswamy H. Sarma 交流。