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通过工程化血红素蛋白对生物催化氮宾 C-H 功能化的计算机制研究。

Computational Mechanistic Investigations of Biocatalytic Nitrenoid C-H Functionalizations via Engineered Heme Proteins.

机构信息

Department of Chemistry and Chemical Biology, Stevens Institute of Technology, 1 Castle Point Terrace, Hoboken, NJ 07030, USA.

出版信息

Chembiochem. 2023 Sep 1;24(17):e202300260. doi: 10.1002/cbic.202300260. Epub 2023 Jul 27.

Abstract

Engineered heme proteins were developed to possess numerous excellent biocatalytic nitrenoid C-H functionalizations. Computational approaches such as density functional theory (DFT), hybrid quantum mechanics/molecular mechanics (QM/MM), and molecular dynamics (MD) calculations were employed to help understand some important mechanistic aspects of these heme nitrene transfer reactions. This review summarizes advances of computational reaction pathway results of these biocatalytic intramolecular and intermolecular C-H aminations/amidations, focusing on mechanistic origins of reactivity, regioselectivity, enantioselectivity, diastereoselectivity as well as effects of substrate substituent, axial ligand, metal center, and protein environment. Some important common and distinctive mechanistic features of these reactions were also described with brief outlook of future development.

摘要

工程血红素蛋白被开发出来,以具有许多优秀的生物催化亚硝酰基 C-H 官能化。计算方法,如密度泛函理论(DFT)、混合量子力学/分子力学(QM/MM)和分子动力学(MD)计算,被用来帮助理解这些血红素亚硝酰基转移反应的一些重要的机制方面。本综述总结了这些生物催化的分子内和分子间 C-H 氨化/酰胺化的计算反应途径的进展,重点介绍了反应性、区域选择性、对映选择性、非对映选择性以及底物取代基、轴向配体、金属中心和蛋白质环境的影响的机制起源。还描述了这些反应的一些重要的共同和独特的机制特征,并对未来的发展进行了简要展望。

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