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导航非自然反应空间:血红素蛋白的定向进化用于选择性卡宾和氮烯转移。

Navigating the Unnatural Reaction Space: Directed Evolution of Heme Proteins for Selective Carbene and Nitrene Transfer.

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, 210-41, 1200 East California Boulevard, Pasadena, California 91125, United States.

出版信息

Acc Chem Res. 2021 Mar 2;54(5):1209-1225. doi: 10.1021/acs.accounts.0c00591. Epub 2021 Jan 25.

Abstract

Despite the astonishing diversity of naturally occurring biocatalytic processes, enzymes do not catalyze many of the transformations favored by synthetic chemists. Either nature does not care about the specific products, or if she does, she has adopted a different synthetic strategy. In many cases, the appropriate reagents used by synthetic chemists are not readily accessible to biological systems. Here, we discuss our efforts to expand the catalytic repertoire of enzymes to encompass powerful reactions previously known only in small-molecule catalysis: formation and transfer of reactive carbene and nitrene intermediates leading to a broad range of products, including products with bonds not known in biology. In light of the structural similarity of iron carbene (Fe═C(R)(R)) and iron nitrene (Fe═NR) to the iron oxo (Fe═O) intermediate involved in cytochrome P450-catalyzed oxidation, we have used synthetic carbene and nitrene precursors that biological systems have not encountered and repurposed P450s to catalyze reactions that are not known in the natural world. The resulting protein catalysts are fully genetically encoded and function in intact microbial cells or cell-free lysates, where their performance can be improved and optimized by directed evolution. By leveraging the catalytic promiscuity of P450 enzymes, we evolved a range of carbene and nitrene transferases exhibiting excellent activity toward these new-to-nature reactions. Since our initial report in 2012, a number of other heme proteins including myoglobins, protoglobins, and cytochromes have also been found and engineered to promote unnatural carbene and nitrene transfer. Due to the altered active-site environments, these heme proteins often displayed complementary activities and selectivities to P450s.Using wild-type and engineered heme proteins, we and others have described a range of selective carbene transfer reactions, including cyclopropanation, cyclopropenation, Si-H insertion, B-H insertion, and C-H insertion. Similarly, a variety of asymmetric nitrene transfer processes including aziridination, sulfide imidation, C-H amidation, and, most recently, C-H amination have been demonstrated. The scopes of these biocatalytic carbene and nitrene transfer reactions are often complementary to the state-of-the-art processes based on small-molecule transition-metal catalysts, making engineered biocatalysts a valuable addition to the synthetic chemist's toolbox. Moreover, enabled by the exquisite regio- and stereocontrol imposed by the enzyme catalyst, this biocatalytic platform provides an exciting opportunity to address challenging problems in modern synthetic chemistry and selective catalysis, including ones that have eluded synthetic chemists for decades.

摘要

尽管自然界中存在着令人惊讶的生物催化过程多样性,但酶并不能催化许多合成化学家所青睐的转化。要么自然不在乎特定的产物,要么如果她在乎,她也采用了不同的合成策略。在许多情况下,合成化学家使用的适当试剂对生物系统来说不容易获得。在这里,我们讨论了我们努力扩大酶的催化范围,以包含以前仅在小分子催化中才知道的强大反应:形成和转移反应性碳烯和氮烯中间体,从而产生广泛的产物,包括生物学中未知的产物。鉴于铁碳烯(Fe═C(R)(R))和铁氮烯(Fe═NR)与细胞色素 P450 催化氧化中涉及的铁氧(Fe═O)中间体的结构相似,我们使用了生物系统以前没有遇到过的合成碳烯和氮烯前体,并重新利用 P450 来催化在自然界中未知的反应。由此产生的蛋白质催化剂完全是基因编码的,在完整的微生物细胞或无细胞裂解物中起作用,在这些系统中,可以通过定向进化来提高和优化其性能。通过利用 P450 酶的催化混杂性,我们进化出了一系列对这些新的自然反应具有优异活性的碳烯和氮烯转移酶。自 2012 年我们首次报道以来,还发现并设计了许多其他血红素蛋白,包括肌红蛋白、原球蛋白和细胞色素,以促进非自然的碳烯和氮烯转移。由于活性部位环境的改变,这些血红素蛋白通常表现出与 P450 互补的活性和选择性。使用野生型和工程化的血红素蛋白,我们和其他人描述了一系列选择性碳烯转移反应,包括环丙烷化、环丙烯化、Si-H 插入、B-H 插入和 C-H 插入。同样,已经证明了各种不对称氮烯转移过程,包括氮丙啶化、硫化物亚胺化、C-H 酰胺化,以及最近的 C-H 胺化。这些生物催化碳烯和氮烯转移反应的范围通常与基于小分子过渡金属催化剂的最先进过程互补,使工程化的生物催化剂成为合成化学家工具包的有价值补充。此外,通过酶催化剂施加的精确区域和立体选择性,该生物催化平台为解决现代合成化学和选择性催化中的挑战性问题提供了一个令人兴奋的机会,其中一些问题已经困扰了合成化学家几十年。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee8f/7931446/a4dd5fb6aabe/ar0c00591_0003.jpg

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