State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-Sen University, Shenzhen, China.
Guangzhou Institute of Forestry and Landscape Architecture, Guangzhou, China.
BMC Genomics. 2023 May 3;24(1):231. doi: 10.1186/s12864-023-09327-z.
Scale insects are worldwide sap-sucking parasites, which can be distinguished into neococcoids and non-neococcoids. Neococcoids are monophyletic with a peculiar reproductive system, paternal genome elimination (PGE). Different with neococcoids, Iceryini, a tribe in non-neococcoids including several damaging pests, has abdominal spiracles, compound eyes in males, relatively abundant wax, unique hermaphrodite system, and specific symbionts. However, the current studies on the gene resources and genomic mechanism of scale insects are mainly limited in the neococcoids, and lacked of comparison in an evolution frame.
We sequenced and de novo assembled a transcriptome of Icerya aegyptiaca (Douglas), a worldwide pest of Iceryini, and used it as representative of non-neococcoids to compare with the genomes or transcriptomes of other six species from different families of neococcoids. We found that the genes under positive selection or negative selection intensification (simplified as "selected genes" below) in I. aegyptiaca included those related to neurogenesis and development, especially eye development. Some genes related to fatty acid biosynthesis were unique in its transcriptome with relatively high expression and not detected in neococcoids. These results may indicate a potential link to the unique structures and abundant wax of I. aegyptiaca compared with neococcoids. Meanwhile, genes related to DNA repair, mitosis, spindle, cytokinesis and oogenesis, were included in the selected genes in I. aegyptiaca, which is possibly associated with cell division and germ cell formation of the hermaphrodite system. Chromatin-related process were enriched from selected genes in neococcoids, along with some mitosis-related genes also detected, which may be related to their unique PGE system. Moreover, in neococcoid species, male-biased genes tend to undergo negative selection relaxation under the PGE system. We also found that the candidate horizontally transferred genes (HTGs) in the scale insects mainly derived from bacteria and fungi. bioD and bioB, the two biotin-synthesizing HTGs were exclusively found in the scale insects and neococcoids, respectively, which possibly show potential demand changes in the symbiotic relationships.
Our study reports the first I. aegyptiaca transcriptome and provides preliminary insights for the genetic change of structures, reproductive systems and symbiont relationships at an evolutionary aspect. This will provide a basis for further research and control of scale insects.
介壳虫是世界性的吸食汁液的寄生虫,可分为新粉蚧和非新粉蚧。新粉蚧是单系的,具有独特的生殖系统,即父本基因组消除(PGE)。与新粉蚧不同的是,非新粉蚧中的一蓟马族包括一些危害性害虫,具有腹部气门、雄性复眼、相对丰富的蜡质、独特的雌雄同体系统和特定的共生体。然而,目前对介壳虫基因资源和基因组机制的研究主要局限于新粉蚧,缺乏在进化框架中的比较。
我们对世界性害虫埃及吹绵蚧(Douglas)的转录组进行了测序和从头组装,并将其作为非新粉蚧的代表,与来自不同新粉蚧科的其他 6 个物种的基因组或转录组进行比较。我们发现,在埃及吹绵蚧中,受到正选择或负选择强化的基因(以下简称“选择基因”)包括与神经发生和发育有关的基因,特别是与眼睛发育有关的基因。一些与脂肪酸生物合成有关的基因在其转录组中是独特的,表达水平较高,而在新粉蚧中则没有检测到。这些结果可能表明,与新粉蚧相比,埃及吹绵蚧具有独特的结构和丰富的蜡质。同时,在埃及吹绵蚧的选择基因中还包括与 DNA 修复、有丝分裂、纺锤体、胞质分裂和卵母细胞形成有关的基因,这可能与雌雄同体系统的细胞分裂和生殖细胞形成有关。在新粉蚧物种中,染色质相关过程是从选择基因中富集而来的,同时还检测到一些与有丝分裂相关的基因,这可能与它们独特的 PGE 系统有关。此外,在新粉蚧物种中,雄性偏性基因在 PGE 系统下倾向于经历负选择松弛。我们还发现,介壳虫中的候选水平转移基因(HTGs)主要来源于细菌和真菌。生物素合成的 HTGs bioD 和 bioB 分别仅在介壳虫和新粉蚧中发现,这可能表明在共生关系中对生物素的需求发生了变化。
本研究报告了首个埃及吹绵蚧转录组,为从进化角度研究结构、生殖系统和共生体关系的遗传变化提供了初步见解。这将为进一步研究和控制介壳虫提供依据。