急性髓系白血病中线粒体代谢相关基因的综合生物信息学分析。

Integrated bioinformatic analysis of mitochondrial metabolism-related genes in acute myeloid leukemia.

机构信息

Department of Hematology, Zhongnan Hospital of Wuhan University, Wuhan, China.

出版信息

Front Immunol. 2023 Apr 17;14:1120670. doi: 10.3389/fimmu.2023.1120670. eCollection 2023.

Abstract

BACKGROUND

Acute myeloid leukemia (AML) is a common hematologic malignancy characterized by poor prognoses and high recurrence rates. Mitochondrial metabolism has been increasingly recognized to be crucial in tumor progression and treatment resistance. The purpose of this study was to examined the role of mitochondrial metabolism in the immune regulation and prognosis of AML.

METHODS

In this study, mutation status of 31 mitochondrial metabolism-related genes (MMRGs) in AML were analyzed. Based on the expression of 31 MMRGs, mitochondrial metabolism scores (MMs) were calculated by single sample gene set enrichment analysis. Differential analysis and weighted co-expression network analysis were performed to identify module MMRGs. Next, univariate Cox regression and the least absolute and selection operator regression were used to select prognosis-associated MMRGs. A prognosis model was then constructed using multivariate Cox regression to calculate risk score. We validated the expression of key MMRGs in clinical specimens using immunohistochemistry (IHC). Then differential analysis was performed to identify differentially expressed genes (DEGs) between high- and low-risk groups. Functional enrichment, interaction networks, drug sensitivity, immune microenvironment, and immunotherapy analyses were also performed to explore the characteristic of DEGs.

RESULTS

Given the association of MMs with prognosis of AML patients, a prognosis model was constructed based on 5 MMRGs, which could accurately distinguish high-risk patients from low-risk patients in both training and validation datasets. IHC results showed that MMRGs were highly expressed in AML samples compared to normal samples. Additionally, the 38 DEGs were mainly related to mitochondrial metabolism, immune signaling, and multiple drug resistance pathways. In addition, high-risk patients with more immune-cell infiltration had higher Tumor Immune Dysfunction and Exclusion scores, indicating poor immunotherapy response. mRNA-drug interactions and drug sensitivity analyses were performed to explore potential druggable hub genes. Furthermore, we combined risk score with age and gender to construct a prognosis model, which could predict the prognosis of AML patients.

CONCLUSION

Our study provided a prognostic predictor for AML patients and revealed that mitochondrial metabolism is associated with immune regulation and drug resistant in AML, providing vital clues for immunotherapies.

摘要

背景

急性髓系白血病(AML)是一种常见的血液恶性肿瘤,其预后较差且复发率较高。线粒体代谢在肿瘤进展和治疗耐药中起着至关重要的作用,这一点已得到越来越多的认识。本研究旨在探讨线粒体代谢在 AML 的免疫调节和预后中的作用。

方法

本研究分析了 31 个与线粒体代谢相关的基因(MMRGs)在 AML 中的突变状态。基于 31 个 MMRGs 的表达情况,通过单样本基因集富集分析计算线粒体代谢评分(MMs)。进行差异分析和加权共表达网络分析,以鉴定模块 MMRGs。然后,采用单变量 Cox 回归和最小绝对收缩和选择算子回归筛选与预后相关的 MMRGs。使用多变量 Cox 回归构建预后模型,以计算风险评分。我们使用免疫组织化学(IHC)在临床标本中验证关键 MMRGs 的表达情况。然后进行差异分析,以鉴定高低风险组之间的差异表达基因(DEGs)。还进行了功能富集、相互作用网络、药物敏感性、免疫微环境和免疫治疗分析,以探索 DEGs 的特征。

结果

鉴于 MMs 与 AML 患者的预后相关,我们基于 5 个 MMRGs 构建了一个预后模型,该模型可以在训练和验证数据集中准确地区分高危患者和低危患者。IHC 结果表明,与正常样本相比,AML 样本中 MMRGs 的表达较高。此外,38 个 DEGs 主要与线粒体代谢、免疫信号和多种药物耐药途径有关。此外,具有更多免疫细胞浸润的高危患者具有更高的肿瘤免疫功能障碍和排斥评分,表明免疫治疗反应较差。进行了 mRNA-药物相互作用和药物敏感性分析,以探索潜在的可用药靶基因。此外,我们将风险评分与年龄和性别相结合,构建了一个预后模型,该模型可以预测 AML 患者的预后。

结论

本研究为 AML 患者提供了一个预后预测指标,并揭示了线粒体代谢与 AML 中的免疫调节和药物耐药有关,为免疫治疗提供了重要线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d1f/10149950/1a4517725b8d/fimmu-14-1120670-g001.jpg

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