State Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Department of Orthopedic, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
Front Immunol. 2023 Apr 17;14:1149513. doi: 10.3389/fimmu.2023.1149513. eCollection 2023.
Acute myeloid leukemia (AML) is a highly aggressive cancer with great heterogeneity and variability in prognosis. Though European Leukemia Net (ELN) 2017 risk classification has been widely used, nearly half of patients were stratified to "intermediate" risk and requires more accurate classification excavating biological features. As new evidence showed that CD8+ T cell can kill cancer cells through ferroptosis pathway. We firstly use CIBERSORT algorithm to divide AMLs into CD8+ and CD8+ T cell groups, then 2789 differentially expressed genes (DEGs) between groups were identified, of which 46 ferroptosis-related genes associated with CD8+ T cell were sorted out. GO, KEGG analysis and PPI network were conducted based on these 46 DEGs. By jointly using LASSO algorithm and Cox univariate regression, we generated a 6-gene prognostic signature comprising , , , , and . Low-risk group shows a longer overall survival. We then validated the prognostic value of this 6-gene signature using two independent external datasets and patient sample collection dataset. We also proved that incorporation of the 6-gene signature obviously enhanced the accuracy of ELN risk classification. Finally, gene mutation analysis, drug sensitive prediction, GSEA and GSVA analysis were conducted between high-risk and low-risk AML patients. Collectively, our findings suggested that the prognostic signature based on CD8+ T cell-related ferroptosis genes can optimize the risk stratification and prognostic prediction of AML patients.
急性髓细胞白血病 (AML) 是一种高度侵袭性的癌症,其预后存在很大的异质性和可变性。尽管欧洲白血病网络 (ELN) 2017 年风险分类已被广泛应用,但仍有近一半的患者被划分为“中危”,需要更准确的分类以挖掘生物学特征。由于新的证据表明 CD8+ T 细胞可以通过铁死亡途径杀死癌细胞。我们首先使用 CIBERSORT 算法将 AML 分为 CD8+ 和 CD8+ T 细胞组,然后鉴定出两组之间的 2789 个差异表达基因 (DEGs),其中 46 个与 CD8+ T 细胞相关的铁死亡相关基因被筛选出来。基于这些 46 个 DEGs 进行了 GO、KEGG 分析和 PPI 网络分析。通过联合使用 LASSO 算法和 Cox 单因素回归,我们生成了一个由 、 、 、 、 和 组成的 6 个基因预后标志。低危组的总体生存率更长。然后,我们使用两个独立的外部数据集和患者样本采集数据集验证了该 6 个基因标志的预后价值。我们还证明,纳入 6 个基因标志明显提高了 ELN 风险分类的准确性。最后,对高危和低危 AML 患者进行了基因突变分析、药物敏感性预测、GSEA 和 GSVA 分析。综上所述,我们的研究结果表明,基于 CD8+ T 细胞相关铁死亡基因的预后标志可以优化 AML 患者的风险分层和预后预测。