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基于计算机模拟和生物信息学的结肠癌机制研究。

A Study Against Colon Cancer Mechanism of Based on Computer Simulation and Bioinformatics.

机构信息

Traditional Chinese Medicine College, Guangdong Pharmaceutical University Guangzhou, 510006, China.

Key Laboratory of North Medicine Foundation and Application Research, Ministry of Education/Heilongjiang Key Laboratory of Pharmacodynamic Substances of Traditional Chinese Medicine and Natural Medicines, Heilongjiang University of Traditional Chinese Medicine, Harbin 150040, Guangzhou, 510145, China.

出版信息

Comb Chem High Throughput Screen. 2024;27(12):1716-1734. doi: 10.2174/1386207326666230504154304.

Abstract

INTRODUCTION

Cancer is one of the leading causes of death worldwide, accounting for nearly one in six deaths in 2020. As a folk medicine, (XSH) has been used many times in clinical practice for the treatment of various diseases. With the increasing number of cancer patients, there is a clinical need to find effective anti-cancer drugs.

AIM

This study aims to explores the bioactivity and the anti-cancer mechanism of XSH.

METHODS

In this study, bioinformatics, network pharmacology, molecular docking, molecular dynamics simulation techniques, and apoptosis assay were used to explore the bioactivity and the anti- cancer mechanism of XSH.

RESULTS

Finally, seven active ingredients in XSH after the screening were obtained, the two most active compounds were β-sitosterol and aloe-emodin, and good anti-cancer activity of XSH was predicted.

DISCUSSION

Four core targets were obtained from the PPI network map, namely Caspase-3 (CASP3), Transcription factor AP-1 (JUN), Myc proto-oncogene protein (MYC), and cellular tumor antigen p53 (TP53). GO and KEGG analyses showed that the mechanism of XSH anti-cancer is mainly related to the apoptosis process, and the main signaling pathways are enriched in the p53 signaling pathway, Apoptosis, and MAPK signaling. The molecular docking and molecular dynamics simulation results showed that CASP3, JUN, MYC, and TP53 had a high affinity with β- sitosterol and aloe-emodin. Bioinformatics analyses demonstrated the importance of core targets. Apoptosis assay showed that XSH could significantly promote the apoptosis of cancer cells, and inhibit their proliferation and migration, especially colon cancer cells.

CONCLUSION

This study uncovered the main active components, bioactivities, and potential targets of XSH, and further revealed the multi-component, multi-target, and multi-pathway mechanism of XSH for cancer treatment and promoting apoptosis.

摘要

简介

癌症是全球主要死因之一,2020 年全球近六分之一的死亡归因于癌症。(XSH)作为一种民间药物,在临床实践中已多次用于治疗各种疾病。随着癌症患者数量的增加,临床需要寻找有效的抗癌药物。

目的

本研究旨在探讨 XSH 的生物活性和抗癌机制。

方法

本研究采用生物信息学、网络药理学、分子对接、分子动力学模拟技术和细胞凋亡实验等方法,探讨 XSH 的生物活性和抗癌机制。

结果

最终筛选出 XSH 的七种活性成分,其中β-谷甾醇和芦荟大黄素两种最具活性的化合物,预测 XSH 具有良好的抗癌活性。

讨论

从 PPI 网络图中获得四个核心靶点,分别为 Caspase-3(CASP3)、转录因子 AP-1(JUN)、原癌基因蛋白 Myc(MYC)和肿瘤抗原 p53(TP53)。GO 和 KEGG 分析表明,XSH 抗癌的机制主要与细胞凋亡过程有关,主要信号通路富集在 p53 信号通路、细胞凋亡和 MAPK 信号通路。分子对接和分子动力学模拟结果表明,CASP3、JUN、MYC 和 TP53 与β-谷甾醇和芦荟大黄素有很高的亲和力。生物信息学分析证明了核心靶点的重要性。细胞凋亡实验表明,XSH 能显著促进癌细胞凋亡,并抑制其增殖和迁移,特别是结肠癌细胞。

结论

本研究揭示了 XSH 的主要活性成分、生物活性和潜在靶点,进一步揭示了 XSH 治疗癌症和促进细胞凋亡的多成分、多靶点、多途径机制。

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