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基于活性学习的基底上细胞弹性模量提取模型

Active learning model for extracting elastic modulus of cell on substrate.

机构信息

State Key Laboratory of Structural Analysis, Optimization and CAE Software for Industrial Equipment, Department of Engineering Mechanics, Dalian University of Technology, Dalian, China.

State Key Laboratory of Structural Analysis, Optimization and CAE Software for Industrial Equipment, Department of Engineering Mechanics, Dalian University of Technology, Dalian, China.

出版信息

Biophys J. 2023 Jun 20;122(12):2489-2499. doi: 10.1016/j.bpj.2023.05.001. Epub 2023 May 5.

DOI:10.1016/j.bpj.2023.05.001
PMID:37147802
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10323012/
Abstract

The cell elastic modulus (E) is widely used as the mechanics-based marker to analyze the biological effects of substrates on cells. However, the employment of the Hertz model to extract the apparent E can cause errors due to the disobedience of the small deformation assumption and the infinite half-space assumption, as well as an inability to deduct the deformation of the substrate. So far, no model can effectively solve the errors caused by the above-mentioned aspects simultaneously. In response to this, herein, we propose an active learning model to extract E. The numerical calculation with finite element suggests the good prediction accuracy of the model. The indentation experiments on both hydrogel and cell indicate that the established model can efficiently reduce the error caused by the method of extracting E. The application of this model may facilitate our understanding about the role of E in correlating the stiffness of substrate and the biological behavior of cell.

摘要

细胞弹性模量(E)常被用作基于力学的标志物,以分析细胞基底的生物效应。然而,由于小变形假设和无限半空间假设的违背,以及无法扣除基底的变形,赫茨模型(Hertz model)在提取表观 E 时会产生误差。到目前为止,还没有模型能够有效地同时解决上述方面引起的误差。针对这一问题,本文提出了一种主动学习模型来提取 E。有限元数值计算表明该模型具有很好的预测精度。水凝胶和细胞的压痕实验表明,所建立的模型可以有效地降低 E 提取方法引起的误差。该模型的应用可能有助于我们理解 E 在关联基底刚度和细胞生物行为中的作用。

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本文引用的文献

1
Machine learning method for extracting elastic modulus of cells.基于机器学习的细胞弹性模量提取方法。
Biomech Model Mechanobiol. 2022 Oct;21(5):1603-1612. doi: 10.1007/s10237-022-01609-x. Epub 2022 Aug 24.
2
Substrate Stiffness Modulates the Growth, Phenotype, and Chemoresistance of Ovarian Cancer Cells.底物硬度调节卵巢癌细胞的生长、表型和化疗耐药性。
Front Cell Dev Biol. 2021 Aug 24;9:718834. doi: 10.3389/fcell.2021.718834. eCollection 2021.
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MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery.MuSyC 是一个共识框架,它统一了组合药物发现的多药物协同作用指标。
Nat Commun. 2021 Jul 29;12(1):4607. doi: 10.1038/s41467-021-24789-z.
4
Knowledge extraction and transfer in data-driven fracture mechanics.基于数据驱动的断裂力学中的知识提取和迁移。
Proc Natl Acad Sci U S A. 2021 Jun 8;118(23). doi: 10.1073/pnas.2104765118.
5
Precise determination of elastic modulus of cell using conical AFM probe.使用锥形原子力显微镜探针精确测定细胞的弹性模量。
J Biomech. 2021 Mar 30;118:110277. doi: 10.1016/j.jbiomech.2021.110277. Epub 2021 Jan 30.
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Substrate stiffness induced mechanotransduction regulates temporal evolution of human fetal neural progenitor cell phenotype, differentiation, and biomechanics.底物硬度诱导的机械转导调节人类胎儿神经祖细胞表型、分化和生物力学的时间演变。
Biomater Sci. 2020 Sep 30;8(19):5452-5464. doi: 10.1039/d0bm01349h.
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Cortical cell stiffness is independent of substrate mechanics.皮质细胞的硬度与基质力学无关。
Nat Mater. 2020 Sep;19(9):1019-1025. doi: 10.1038/s41563-020-0684-x. Epub 2020 May 25.
8
Determination of the Elastic Moduli of a Single Cell Cultured on a Rigid Support by Force Microscopy.通过力显微镜测定刚性基底上培养的单细胞的弹性模量。
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Sci Rep. 2017 Oct 17;7(1):13413. doi: 10.1038/s41598-017-13866-3.
10
On the determination of elastic moduli of cells by AFM based indentation.基于原子力显微镜压痕法测定细胞的弹性模量。
Sci Rep. 2017 Apr 3;7:45575. doi: 10.1038/srep45575.