Biosystems and Integrative Sciences Institute, Faculdade de Ciências da Universidade de Lisboa, Lisboa, Portugal.
Crit Rev Biochem Mol Biol. 2023 Feb;58(1):50-80. doi: 10.1080/10409238.2023.2201406. Epub 2023 May 9.
Protein aggregation is implicated in multiple diseases, so-called proteinopathies, ranging from neurodegenerative disorders such as Alzheimer's disease and Parkinson's disease (PD) to type 2 diabetes mellitus and sickle cell disease (SCD). The structure of the protein aggregates and the kinetics and mechanisms of aggregation have been the object of intense research over the years toward the development of therapeutic routes, including the design of aggregation inhibitors. Nonetheless, the rational design of drugs targeting aggregation inhibition remains a challenging endeavor because of multiple, disease-specific factors, including an incomplete understanding of protein function, the multitude of toxic and non-toxic protein aggregates, the lack of specific drug binding targets, discrepant action mechanisms of aggregation inhibitors, or a low selectivity, specificity, and/or drug potency, reflected in the high concentrations required for some inhibitors to be effective. Herein, we provide a perspective of this therapeutic route with emphasis on small molecules and peptide-based drugs in two diverse diseases, PD and SCD, aiming at establishing links among proposed aggregation inhibitors. The small and large length-scale regimes of the hydrophobic effect are discussed in light of the importance of hydrophobic interactions in proteinopathies. Some simulation results are reported on model peptides, illustrating the impact of hydrophobic and hydrophilic groups in water's hydrogen-bond network with an impact on drug binding. The seeming importance of aromatic rings and hydroxyl groups in protein-aggregation-inhibitor-drugs is emphasized along with the challenges associated with some inhibitors, limiting their development into effective therapeutic options, and questioning the potential of this therapeutic route.
蛋白质聚集与多种疾病有关,即所谓的蛋白质病,包括神经退行性疾病,如阿尔茨海默病和帕金森病(PD),以及 2 型糖尿病和镰状细胞病(SCD)。多年来,蛋白质聚集物的结构以及聚集的动力学和机制一直是研究的重点,以开发治疗途径,包括聚集抑制剂的设计。然而,由于多种特定于疾病的因素,包括对蛋白质功能的不完全了解、大量有毒和无毒的蛋白质聚集物、缺乏特定的药物结合靶点、聚集抑制剂的作用机制不一致,或低选择性、特异性和/或药物效力,反映在一些抑制剂需要高浓度才能有效,针对聚集抑制的合理药物设计仍然具有挑战性。在此,我们提供了这一治疗途径的视角,重点介绍了两种不同疾病(PD 和 SCD)中小分子和基于肽的药物,旨在建立所提出的聚集抑制剂之间的联系。讨论了疏水性的小和大尺度范围,以强调疏水性相互作用在蛋白质病中的重要性。报告了一些关于模型肽的模拟结果,说明了疏水区和亲水区对水的氢键网络的影响,从而影响药物结合。强调了芳香环和羟基在蛋白质聚集抑制剂药物中的重要性,以及与一些抑制剂相关的挑战,这些挑战限制了它们发展为有效治疗选择,并质疑这种治疗途径的潜力。