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意大利晚期实体瘤患者基因组分析的现行实践:意大利可操作突变登记(RATIONAL)研究。

Current practice of genomic profiling of patients with advanced solid tumours in Italy: the Italian Register of Actionable Mutations (RATIONAL) study.

机构信息

Cell Biology and Biotherapy Unit, Istituto Nazionale Tumori - IRCCS - Fondazione G. Pascale, Napoli, Italy.

Cell Biology and Biotherapy Unit, Istituto Nazionale Tumori - IRCCS - Fondazione G. Pascale, Napoli, Italy.

出版信息

Eur J Cancer. 2023 Jul;187:174-184. doi: 10.1016/j.ejca.2023.03.027. Epub 2023 Mar 30.

Abstract

BACKGROUND

The Italian Register of Actionable Mutations (RATIONAL) is a multicentric, observational study collecting next-generation sequencing (NGS)-based tumour profiling data of patients with advanced solid tumours.

METHODS

The study enrols patients who had available an NGS-based tumour profiling (Pathway-A) or undergo comprehensive genomic profiling (CGP) with FoundationOne CDx assays within the trial (Pathway-B). The primary endpoint was the rate of actionable mutations identified.

RESULTS

Sequencing data were available for 738 patients in Pathway-A (218) and -B (520). In Pathway-A, 154/218 (70.6%) tests were performed using NGS panels ≤52 genes, and genomic alterations (GAs) were found in 164/218 (75.2%) patients. In Pathway-B, CGP revealed GAs in 512/520 (98.5%) patients. Levels I/II/III actionable GAs according to the European Society of Medical Oncology Scale for Clinical Actionability of molecular Targets (ESCAT) were identified in 254/554 (45.8%) patients with non-small-cell lung cancer, cholangiocarcinoma, colorectal, gastric, pancreatic and breast cancer. The rate of patients with level I GAs was similar in Pathways A and B (69 versus 102). CGP in Pathway-B revealed a higher number of patients with level II/III GAs (99 versus 20) and potentially germline pathogenic/likely pathogenic variants (58 versus 15) as compared with standard testing in Pathway-A. In patients with cancer of unknown primary, CGP detected OncoKB levels 3B/4 GAs in 31/58 (53.4%) cases. Overall, 67/573 (11.7%) of patients received targeted therapy based on genomic testing.

CONCLUSION

The Italian Register of Actionable Mutations represents the first overview of genomic profiling in Italian current clinical practice and highlights the utility of CGP for identifying therapeutic targets in selected cancer patients.

摘要

背景

意大利可操作突变登记册(RATIONAL)是一项多中心、观察性研究,收集了晚期实体瘤患者基于下一代测序(NGS)的肿瘤分析数据。

方法

本研究纳入了在试验中具有基于 NGS 的肿瘤分析(Pathway-A)或接受 FoundationOne CDx 检测的全面基因组分析(CGP)(Pathway-B)的患者。主要终点是确定的可操作突变的发生率。

结果

Pathway-A 中 218 例中有 738 例(218)和 -B(520)有测序数据。在 Pathway-A 中,154/218(70.6%)的测试使用了≤52 个基因的 NGS 面板进行,164/218(75.2%)的患者发现了基因组改变(GA)。在 Pathway-B 中,CGP 显示 520 例中的 512 例(98.5%)患者有 GA。根据欧洲肿瘤内科学会临床分子靶点可操作性的分子靶标分类(ESCAT),1 级/2 级/3 级可操作 GA 分别在 554 例非小细胞肺癌、胆管癌、结直肠癌、胃癌、胰腺癌和乳腺癌患者中被确定为 254 例(45.8%)。在 Pathways A 和 B 中,1 级 GA 的患者比例相似(69 例比 102 例)。Pathway-B 中的 CGP 显示,与标准检测相比,有更多的 2 级/3 级 GA(99 例比 20 例)和潜在的种系致病性/可能致病性变异(58 例比 15 例)的患者。在未知原发性癌症患者中,CGP 检测到 58 例中的 31 例(53.4%)为 OncoKB 水平 3B/4 GA。总体而言,573 例患者中的 67 例(11.7%)根据基因组检测接受了靶向治疗。

结论

意大利可操作突变登记册代表了意大利当前临床实践中基因组分析的第一个概述,并强调了 CGP 在确定选定癌症患者的治疗靶点方面的应用。

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