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sp. nov. 和 subsp. subsp. nov.,从昆虫病原线虫中分离得到。

sp. nov. and subsp. subsp. nov., isolated from entomopathogenic nematodes.

机构信息

Experimental Biology Research Group, Institute of Biology. University of Neuchâtel, Neuchâtel, Switzerland.

Department of Biosciences, University Center for Research and Development, Chandigarh University, Gharuan, Mohali, 140413, Punjab, India.

出版信息

Int J Syst Evol Microbiol. 2023 May;73(5). doi: 10.1099/ijsem.0.005872.

Abstract

Six Gram-negative, rod-shaped bacterial strains isolated from entomopathogenic nematodes were characterized to determine their taxonomic position. 16S rRNA and gene sequences indicate that they belong to the class , family and genus , and that some of them are conspecifics. Two of them, APURE and JAR, were selected for further molecular characterization using whole genome- and whole-proteome-based phylogenetic reconstructions and sequence comparisons. Phylogenetic reconstructions using whole genome and whole proteome sequences show that strains APURE and JAR are closely related to subsp. ATCC 29999 and to subsp. MEX47-22. Moreover, digital DNA-DNA hybridization (dDDH) values between APURE and subsp. ATCC 29999, APURE and subsp. MEX47-22, and APURE and JAR are 61.6, 61.2 and 64.1 %, respectively. These values are below the 70 % divergence threshold that delimits prokaryotic species. dDDH scores between JAR and subsp. ATCC 29999 and between JAR and subsp. MEX47-22 are 71.9 and 74.8 %, respectively. These values are within the 70 and 79 % divergence thresholds that delimit prokaryotic subspecies. Based on these genomic divergence values, APURE and JAR represent two different taxa, for which we propose the names: sp. nov. with APURE (=CCM 9236 =CCOS 2019) as type strain and subsp. subsp. nov. with JAR (=CCM 9235 =CCOS 2021) as type strain. Our study contributes to a better understanding of the biodiversity of an important bacterial group with enormous biotechnological and agricultural potential.

摘要

从昆虫病原线虫中分离到的 6 株革兰氏阴性、杆状细菌菌株进行了特征描述,以确定它们的分类地位。16S rRNA 和 基因序列表明它们属于 纲、 科和 属,其中一些是同种的。选择其中的 2 株,APURE 和 JAR,进行进一步的分子特征描述,使用全基因组和全蛋白质组的系统发育重建和序列比较。使用全基因组和全蛋白质组序列进行的系统发育重建表明,菌株 APURE 和 JAR 与 亚种 ATCC 29999 和 亚种 MEX47-22 密切相关。此外,APURE 与 亚种 ATCC 29999、APURE 与 亚种 MEX47-22 和 APURE 与 JAR 之间的数字 DNA-DNA 杂交(dDDH)值分别为 61.6%、61.2%和 64.1%。这些值低于 70%的分歧阈值,该阈值限制了原核生物的种。JAR 与 亚种 ATCC 29999 和 JAR 与 亚种 MEX47-22 之间的 dDDH 评分分别为 71.9%和 74.8%。这些值在 70 和 79%的原核生物亚种分歧阈值内。基于这些基因组分歧值,APURE 和 JAR 代表两个不同的分类群,我们建议将其命名为:新种,APURE(=CCM 9236=CCOS 2019)为模式株, 亚种。新亚种,JAR(=CCM 9235=CCOS 2021)为模式株。我们的研究有助于更好地了解具有巨大生物技术和农业潜力的重要细菌群体的生物多样性。

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