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骨髓和外周血配对样本的髓系二代测序分析结果一致:AGMT研究组的前瞻性队列分析

Myeloid NGS Analyses of Paired Samples from Bone Marrow and Peripheral Blood Yield Concordant Results: A Prospective Cohort Analysis of the AGMT Study Group.

作者信息

Jansko-Gadermeir Bettina, Leisch Michael, Gassner Franz J, Zaborsky Nadja, Dillinger Thomas, Hutter Sonja, Risch Angela, Melchardt Thomas, Egle Alexander, Drost Manuel, Larcher-Senn Julian, Greil Richard, Pleyer Lisa

机构信息

Salzburg Cancer Research Institute (SCRI), Center for Clinical Cancer and Immunology Trials (CCCIT), 5020 Salzburg, Austria.

3rd Medical Department with Hematology, Medical Oncology, Hemostaseology, Rheumatology and Infectiology, Oncologic Center, Paracelsus Medical University, 5020 Salzburg, Austria.

出版信息

Cancers (Basel). 2023 Apr 14;15(8):2305. doi: 10.3390/cancers15082305.

DOI:10.3390/cancers15082305
PMID:37190237
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10136651/
Abstract

: Next generation sequencing (NGS) has become indispensable for diagnosis, risk stratification, prognostication, and monitoring of response in patients with myeloid neoplasias. Guidelines require bone marrow evaluations for the above, which are often not performed outside of clinical trials, indicating a need for surrogate samples. : Myeloid NGS analyses (40 genes and 29 fusion drivers) of 240 consecutive, non-selected, prospectively collected, paired bone marrow/peripheral blood samples were compared. : Very strong correlation (r = 0.91, < 0.0001), high concordance (99.6%), sensitivity (98.8%), specificity (99.9%), positive predictive value (99.8%), and negative predictive value (99.6%) between NGS analyses of paired samples was observed. A total of 9/1321 (0.68%) detected mutations were discordant, 8 of which had a variant allele frequency (VAF) ≤ 3.7%. VAFs between peripheral blood and bone marrow samples were very strongly correlated in the total cohort (r = 0.93, = 0.0001) and in subgroups without circulating blasts (r = 0.92, < 0.0001) or with neutropenia (r = 0.88, < 0.0001). There was a weak correlation between the VAF of a detected mutation and the blast count in either the peripheral blood (r = 0.19) or the bone marrow (r = 0.11). : Peripheral blood samples can be used to molecularly classify and monitor myeloid neoplasms via NGS without loss of sensitivity/specificity, even in the absence of circulating blasts or in neutropenic patients.

摘要

下一代测序(NGS)已成为髓系肿瘤患者诊断、风险分层、预后评估及反应监测中不可或缺的工具。指南要求进行上述操作时需进行骨髓评估,但在临床试验之外这些评估往往未实施,这表明需要替代样本。对240份连续、未选择、前瞻性收集的配对骨髓/外周血样本进行了髓系NGS分析(40个基因和29个融合驱动基因)比较。配对样本的NGS分析之间观察到极强的相关性(r = 0.91,P < 0.0001)、高一致性(99.6%)、敏感性(98.8%)、特异性(99.9%)、阳性预测值(99.8%)和阴性预测值(99.6%)。总共9/1321(0.68%)检测到的突变不一致,其中8个的变异等位基因频率(VAF)≤3.7%。外周血和骨髓样本之间的VAF在整个队列中(r = 0.93,P = 0.0001)以及在无循环原始细胞的亚组中(r = 0.92,P < 0.0001)或有中性粒细胞减少的亚组中(r = 0.88,P < 0.0001)具有极强的相关性。检测到的突变的VAF与外周血(r = 0.19)或骨髓(r = 0.11)中的原始细胞计数之间存在弱相关性。外周血样本可用于通过NGS对髓系肿瘤进行分子分类和监测,而不会损失敏感性/特异性,即使在无循环原始细胞或中性粒细胞减少的患者中也是如此。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/b1e35451c4e7/cancers-15-02305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/12244bb1d78d/cancers-15-02305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/d090e87ea4fa/cancers-15-02305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/4f6d2d4301cf/cancers-15-02305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/c0b6d3fef068/cancers-15-02305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/767bed41416f/cancers-15-02305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/b1e35451c4e7/cancers-15-02305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/12244bb1d78d/cancers-15-02305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/d090e87ea4fa/cancers-15-02305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/4f6d2d4301cf/cancers-15-02305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/c0b6d3fef068/cancers-15-02305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/767bed41416f/cancers-15-02305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5882/10136651/b1e35451c4e7/cancers-15-02305-g006.jpg

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