Division of Joint Surgery and Sports Medicine, Department of Orthopedic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, Hubei 430071, China.
Department of Spine Surgery and Musculoskeletal Tumor, Department of Orthopedic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, Hubei 430071, China.
Crit Rev Eukaryot Gene Expr. 2023;33(5):61-71. doi: 10.1615/CritRevEukaryotGeneExpr.v33.i5.60.
Infantile hemangioma (IH) is the most common vascular tumor among infants and children. However, the understanding of pathogenesis about IH has not been fully elucidated, and the potential diagnostic maker remains further explored. In this study, we aimed to find miRNAs as potential biomarkers of IH through bioinformatic analysis. The microarray datasets GSE69136, GSE100682 were downloaded from the GEO database. The co-expressed differential miRNAs were identified by analyzing these two datasets. The downstream common target genes were predicted by the ENCORI, Mirgene, miRWalk, and Targetscan databases. GO annotation and KEGG pathway enrichment analysis for target genes were performed. The STRING database and Cytoscape software were used to construct the protein-protein interaction network and screen hub genes. Then potential diagnostic markers for IH were further screened and identified by using Receiver operating characteristic curve analysis. A total of thirteen co-expressed up-regulated miRNAs were screened out in the above two datasets, and 778 down-regulated target genes were then predicted. GO annotation and KEGG pathway enrichment analysis indicated that the common target genes strongly correlated with IH. Through the DEM-hub gene network construction, six miRNAs associated with the hub genes were identified. Finally, has-miR-522-3p, has-miR-512-3p, has-miR-520a-5p with high diagnostic values were screened out by receiver operating characteristic analysis. In the study, the potential miRNA-mRNA regulatory network was firstly constructed in IH. And, the three miRNAs might be used as potential biomarkers for IH, which also provided novel strategies for the therapeutic intervention of IH.
婴儿血管瘤(IH)是婴儿和儿童中最常见的血管肿瘤。然而,IH 的发病机制尚未完全阐明,潜在的诊断标志物仍在进一步探索中。在本研究中,我们旨在通过生物信息学分析寻找作为 IH 潜在生物标志物的 miRNAs。从 GEO 数据库中下载微阵列数据集 GSE69136 和 GSE100682。通过分析这两个数据集来鉴定共表达的差异 miRNAs。通过 ENCORI、Mirgene、miRWalk 和 Targetscan 数据库预测下游共同的靶基因。对靶基因进行 GO 注释和 KEGG 通路富集分析。使用 STRING 数据库和 Cytoscape 软件构建蛋白质-蛋白质相互作用网络并筛选枢纽基因。然后通过接受者操作特征曲线分析进一步筛选和鉴定 IH 的潜在诊断标志物。在上述两个数据集中共筛选出 13 个共表达上调的 miRNA,然后预测出 778 个下调的靶基因。GO 注释和 KEGG 通路富集分析表明,共同的靶基因与 IH 密切相关。通过 DEM-hub 基因网络构建,鉴定出与 hub 基因相关的 6 个 miRNAs。最后,通过接受者操作特征分析筛选出具有高诊断价值的 has-miR-522-3p、has-miR-512-3p 和 has-miR-520a-5p。在这项研究中,首先构建了 IH 中潜在的 miRNA-mRNA 调控网络。并且,这三个 miRNA 可能作为 IH 的潜在生物标志物,为 IH 的治疗干预提供了新的策略。