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sp. nov.,一种从突尼斯的根瘤中分离到的固氮共生新变种。

sp. nov., a new nitrogen-fixing symbiovar isolated from root nodules of in Tunisia.

机构信息

Laboratory of Legumes and Sustainable Agrosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia.

Agricultural Cultural Collection of China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100080, PR China.

出版信息

Int J Syst Evol Microbiol. 2023 May;73(5). doi: 10.1099/ijsem.0.005900.

Abstract

Three bacterial strains, 1AS11, 1AS12 and 1AS13, members of the new symbiovar salignae and isolated from root nodules of grown in Tunisia, were characterized using a polyphasic approach. All three strains were assigned to the complex on the basis of gene analysis. Phylogenetic analysis based on 1734 nucleotides of four concatenated housekeeping genes (, , and ) showed that the three strains were distinct from known rhizobia species of the complex and clustered as a separate clade within this complex. Phylogenomic analysis of 92 up-to-date bacterial core genes confirmed the unique clade. The digital DNA-DNA hybridization and blast-based average nucleotide identity values for the three strains and phylogenetically related species ranged from 35.9 to 60.0% and 87.16 to 94.58 %, which were lower than the 70 and 96% species delineation thresholds, respectively. The G+C contents of the strains were 60.82-60.92 mol% and the major fatty acids (>4 %) were summed feature 8 (57.81 %; C ω7) and C ω7 11-methyl (13.24%). Strains 1AS11, 1AS12 and 1AS13 could also be differentiated from their closest described species (, and ) by phenotypic and physiological properties as well as fatty acid content. Based on the phylogenetic, genomic, physiological, genotypic and chemotaxonomic data presented in this study, strains 1AS11, 1AS12 and 1AS13 represent a new species within the genus and we propose the name sp. nov. The type strain is 1AS11 (=DSM 113913=ACCC 62388).

摘要

从突尼斯种植的中分离出的三株细菌菌株 1AS11、1AS12 和 1AS13,属于新共生体 salignae,采用多相方法进行了表征。所有三株菌均根据基因分析被分配到复合群中。基于四个串联的看家基因(、、和)的 1734 个核苷酸的系统发育分析表明,这三株菌与已知的复合群根瘤菌物种不同,并且在该复合群内聚类为一个单独的分支。92 个最新细菌核心基因的系统基因组分析证实了这个独特的分支。三株菌与系统发育相关的种的数字 DNA-DNA 杂交和基于 Blast 的平均核苷酸同一性值在 35.9%到 60.0%和 87.16%到 94.58%之间,低于 70%和 96%的物种划分阈值。菌株的 G+C 含量为 60.82-60.92mol%,主要脂肪酸(>4%)为总和特征 8(57.81%;Cω7)和 Cω7 11-甲基(13.24%)。菌株 1AS11、1AS12 和 1AS13 还可以通过表型和生理特性以及脂肪酸含量与最接近描述的种(、和)区分开来。基于本研究中提供的系统发育、基因组、生理、基因型和化学分类学数据,菌株 1AS11、1AS12 和 1AS13 代表属内的一个新种,我们建议使用新种名 。模式菌株是 1AS11(=DSM 113913=ACCC 62388)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa2/11426921/b133bfc824e6/ijsem-73-05900-g001.jpg

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