Napier-Jameson Rebekah, Marx Olivia, Norris Adam
Southern Methodist University, Dallas TX.
bioRxiv. 2023 Jun 23:2023.05.10.540279. doi: 10.1101/2023.05.10.540279.
Regulation of lifespan by transcription factors has been well established. More recently a role for RNA binding proteins (RBPs) in regulating lifespan has also emerged. In both cases, a major challenge is to determine which regulatory targets are functionally responsible for the observed lifespan phenotype. We recently identified a pair of RBPs, and , which display synthetic (non-additive) lifespan defects: single mutants do not affect lifespan, but double mutants have strongly reduced lifespan. Such a strong synthetic phenotype represented an opportunity to use transcriptomics to search for potential causative targets that are synthetically regulated. Focus on such genes would allow us to narrow our target search by ignoring the hundreds of genes altered only in single mutants, and provide a shortlist of synthetically-regulated candidate targets that might be responsible for the double mutant phenotype. We identified a small handful of genes synthetically dysregulated in double mutants and systematically tested each candidate gene for functional contribution to the lifespan phenotype. We identified one such gene, the ion transporter , which is highly upregulated in double mutants. Overexpression of causes reduced lifespan, and deletion of in an background partially restores both lifespan and healthspan. Together, these results reveal that a pair of RBPs mediate lifespan in part by inhibiting expression of an ion transporter, and provide a template for how synthetic phenotypes (including lifespan) can be dissected at the transcriptomic level to reveal potential causative genes.
转录因子对寿命的调控已得到充分证实。最近,RNA结合蛋白(RBPs)在调控寿命方面的作用也已显现。在这两种情况下,一个主要挑战是确定哪些调控靶点在功能上导致了观察到的寿命表型。我们最近鉴定出一对RBPs,即[具体名称1]和[具体名称2],它们表现出合成(非累加)的寿命缺陷:单个突变体不影响寿命,但[具体名称1][具体名称2]双突变体的寿命大幅缩短。这种强烈的合成表型为利用转录组学寻找受合成调控的潜在致病靶点提供了契机。关注此类基因将使我们能够通过忽略仅在单个突变体中发生改变的数百个基因来缩小靶点搜索范围,并提供一份可能导致双突变体表型的受合成调控的候选靶点短名单。我们鉴定出少数在双突变体中合成失调的基因,并系统地测试了每个候选基因对[具体物种名称]寿命表型的功能贡献。我们鉴定出一个这样的基因,即离子转运蛋白[具体名称3],它在双突变体中高度上调。[具体名称3]的过表达导致寿命缩短,在[具体物种名称]背景下缺失[具体名称3]可部分恢复寿命和健康寿命。总之,这些结果表明,一对RBPs部分通过抑制离子转运蛋白的表达来介导寿命,并为如何在转录组水平剖析合成表型(包括寿命)以揭示潜在致病基因提供了一个模板。