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产前外显子组测序的检测前和检测后遗传咨询中的挑战与实用解决方案

Challenges and Pragmatic Solutions in Pre-Test and Post-Test Genetic Counseling for Prenatal Exome Sequencing.

作者信息

Diderich Karin E M, Klapwijk Jasmijn E, van der Schoot Vyne, Brüggenwirth Hennie T, Joosten Marieke, Srebniak Malgorzata I

机构信息

Department of Clinical Genetics, Erasmus MC, Rotterdam, the Netherlands.

出版信息

Appl Clin Genet. 2023 May 15;16:89-97. doi: 10.2147/TACG.S411185. eCollection 2023.

DOI:10.2147/TACG.S411185
PMID:37216148
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10198275/
Abstract

The yield of genetic prenatal diagnosis has been notably improved by introducing whole genome chromosomal microarray (CMA) and prenatal exome sequencing (pES). However, together with increased numbers of diagnoses made, the need to manage challenging findings such as variants of unknown significance (VUS) and incidental findings (IF) also increased. We have summarized the current guidelines and recommendations and we have shown current solutions used in our tertiary center in the Netherlands. We discuss four of the most common clinical situations: fetus with normal pES results, fetus with a pathogenic finding explaining the fetal phenotype, fetus with a variant of uncertain clinical significance fitting the phenotype and fetus with a variant leading to an incidental diagnosis. Additionally, we reflect on solutions in order to facilitate genetic counseling in an NGS-era.

摘要

通过引入全基因组染色体微阵列(CMA)和产前外显子组测序(pES),遗传性产前诊断的检出率得到了显著提高。然而,随着诊断数量的增加,处理诸如意义未明的变异(VUS)和偶发发现(IF)等具有挑战性的结果的需求也增加了。我们总结了当前的指南和建议,并展示了我们荷兰三级中心目前使用的解决方案。我们讨论了四种最常见的临床情况:pES结果正常的胎儿、有致病性发现可解释胎儿表型的胎儿、有符合表型但临床意义不确定的变异的胎儿以及有导致偶发诊断的变异的胎儿。此外,我们思考了一些解决方案,以便在二代测序时代促进遗传咨询。

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本文引用的文献

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Clinical geneticists' views on and experiences with unsolicited findings in next-generation sequencing: "A great technology creating new dilemmas".临床遗传学家对下一代测序中意外发现的看法及经历:“一项带来新困境的伟大技术”
J Genet Couns. 2023 Apr;32(2):387-396. doi: 10.1002/jgc4.1647. Epub 2022 Nov 11.
2
Impact of variation in practice in the prenatal reporting of variants of uncertain significance by commercial laboratories: Need for greater adherence to published guidelines.商业实验室产前报告不确定意义变异时实践差异的影响:需要更加严格地遵循已发布的指南。
Prenat Diagn. 2022 Nov;42(12):1514-1524. doi: 10.1002/pd.6232. Epub 2022 Sep 18.
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Lessons learned from unsolicited findings in clinical exome sequencing of 16,482 individuals.从 16482 例临床外显子组测序中的意外发现中吸取的经验教训。
Eur J Hum Genet. 2022 Feb;30(2):170-177. doi: 10.1038/s41431-021-00964-0. Epub 2021 Oct 25.
4
Clinical application of fetal genome-wide sequencing during pregnancy: position statement of the Canadian College of Medical Geneticists.孕期胎儿全基因组测序的临床应用:加拿大医学遗传学家学院立场声明
J Med Genet. 2022 Oct;59(10):931-937. doi: 10.1136/jmedgenet-2021-107897. Epub 2021 Sep 20.
5
Correction to: ACMG SF v3.0 list for reporting of secondary findings in clinical exome and genome sequencing: a policy statement of the American College of Medical Genetics and Genomics (ACMG).对《美国医学遗传学与基因组学学会(ACMG)关于临床外显子组和基因组测序中次要发现报告的ACMG SF v3.0列表:政策声明》的勘误
Genet Med. 2021 Aug;23(8):1582-1584. doi: 10.1038/s41436-021-01278-8.
6
How to deal with uncertainty in prenatal genomics: A systematic review of guidelines and policies.如何应对产前基因组学中的不确定性:指南和政策的系统评价。
Clin Genet. 2021 Dec;100(6):647-658. doi: 10.1111/cge.14010. Epub 2021 Jun 30.
7
The potential diagnostic yield of whole exome sequencing in pregnancies complicated by fetal ultrasound anomalies.全外显子测序在胎儿超声异常合并妊娠中的潜在诊断收益。
Acta Obstet Gynecol Scand. 2021 Jun;100(6):1106-1115. doi: 10.1111/aogs.14053. Epub 2020 Dec 28.
8
The role of next-generation sequencing in the investigation of ultrasound-identified fetal structural anomalies.下一代测序在超声识别胎儿结构异常中的作用。
BJOG. 2021 Jan;128(2):420-429. doi: 10.1111/1471-0528.16533.
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Parental experiences of uncertainty following an abnormal fetal anomaly scan: Insights using Han's taxonomy of uncertainty.父母在胎儿异常扫描后经历的不确定性:使用汉氏不确定性分类法的洞察。
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