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CIGAF——一个用于昆虫共生毛霉真菌的数据库和交互平台。

CIGAF-a database and interactive platform for insect-associated trichomycete fungi.

机构信息

Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks St, Toronto, Ontario M5S 3B2, Canada.

Department of Biological Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario M1C 1A4, Canada.

出版信息

Database (Oxford). 2023 May 23;2023. doi: 10.1093/database/baad038.

Abstract

Trichomycete fungi are gut symbionts of arthropods living in aquatic habitats. The lack of a central platform with accessible collection records and associated ecological metadata has limited ecological investigations of trichomycetes. We present CIGAF (short for Collections of Insect Gut-Associated Fungi), a trichomycetes-focused digital database with interactive visualization functions enabled by the R Shiny web application. CIGAF curated 3120 collection records of trichomycetes across the globe, spanning from 1929 to 2022. CIGAF allows the exploration of nearly 100 years of field collection data through the web interface, including primary published data such as insect host information, collection site coordinates, descriptions and date of collection. When possible, specimen records are supplemented with climatic measures at collection sites. As a central platform of field collection records, multiple interactive tools allow users to analyze and plot data at various levels. CIGAF provides a comprehensive resource hub to the research community for further studies in mycology, entomology, symbiosis and biogeography.

摘要

食毛菌是生活在水生栖息地的节肢动物的肠道共生菌。由于缺乏一个具有可访问的采集记录和相关生态元数据的中央平台,限制了对食毛菌的生态研究。我们提出了 CIGAF(昆虫肠道相关真菌收藏的缩写),这是一个专注于食毛菌的数字数据库,具有由 R Shiny 网络应用程序提供的交互式可视化功能。CIGAF 整理了全球范围内 3120 条食毛菌的采集记录,时间跨度从 1929 年到 2022 年。CIGAF 通过网络界面允许探索近 100 年的野外采集数据,包括昆虫宿主信息、采集地点坐标、描述和采集日期等主要已发表数据。在可能的情况下,标本记录会补充采集地点的气候测量数据。作为野外采集记录的中央平台,多个交互式工具允许用户在各个级别上分析和绘制数据。CIGAF 为真菌学、昆虫学、共生和生物地理学的研究提供了一个综合性的资源中心,供进一步研究使用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fbe/10211464/bb444cc26e34/baad038f1.jpg

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