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菊粉利用过程中微生物相互作用的筛选揭示了副干酪乳杆菌 M38 中的强烈竞争和蛋白质组变化。

Screening Microbial Interactions During Inulin Utilization Reveals Strong Competition and Proteomic Changes in Lacticaseibacillus paracasei M38.

机构信息

Department of Chemical and Bioprocess Engineering, School of Engineering, Pontificia Universidad Católica de Chile, Vicuña Mackenna 4860, Santiago, Chile.

Facultad de Veterinaria, Higiene y Seguridad Alimentaria, Instituto Universitario de Investigación de Carne y Productos Cárnicos, Universidad de Extremadura, Avda. de las Ciencias s/n, 10003, Cáceres, Spain.

出版信息

Probiotics Antimicrob Proteins. 2024 Jun;16(3):993-1011. doi: 10.1007/s12602-023-10083-5. Epub 2023 May 25.

Abstract

Competition for resources is a common microbial interaction in the gut microbiome. Inulin is a well-studied prebiotic dietary fiber that profoundly shapes gut microbiome composition. Several community members and some probiotics, such as Lacticaseibacillus paracasei, deploy multiple molecular strategies to access fructans. In this work, we screened bacterial interactions during inulin utilization in representative gut microbes. Unidirectional and bidirectional assays were used to evaluate the effects of microbial interactions and global proteomic changes on inulin utilization. Unidirectional assays showed the total or partial consumption of inulin by many gut microbes. Partial consumption was associated with cross-feeding of fructose or short oligosaccharides. However, bidirectional assays showed strong competition from L. paracasei M38 against other gut microbes, reducing the growth and quantity of proteins found in the latter. L. paracasei dominated and outcompeted other inulin utilizers, such as Ligilactobacillus ruminis PT16, Bifidobacterium longum PT4, and Bacteroides fragilis HM714. The importance of strain-specific characteristics of L. paracasei, such as its high fitness for inulin consumption, allows it to be favored for bacterial competence. Proteomic studies indicated an increase in inulin-degrading enzymes in co-cultures, such as β-fructosidase, 6-phosphofructokinase, the PTS D-fructose system, and ABC transporters. These results reveal that intestinal metabolic interactions are strain-dependent and might result in cross-feeding or competition depending on total or partial consumption of inulin. Partial degradation of inulin by certain bacteria favors coexistence. However, when L. paracasei M38 totally degrades the fiber, this does not happen. The synergy of this prebiotic with L. paracasei M38 could determine the predominance in the host as a potential probiotic.

摘要

资源竞争是肠道微生物组中常见的微生物相互作用。菊粉是一种研究充分的膳食纤维,它能深刻地影响肠道微生物组的组成。一些群落成员和一些益生菌,如副干酪乳杆菌 M38,利用多种分子策略来获取菊粉。在这项工作中,我们筛选了代表肠道微生物在利用菊粉过程中的细菌相互作用。单向和双向测定用于评估微生物相互作用和全局蛋白质组变化对菊粉利用的影响。单向测定显示,许多肠道微生物会完全或部分消耗菊粉。部分消耗与果糖或短寡糖的交叉喂养有关。然而,双向测定显示,L. paracasei M38 对其他肠道微生物具有强烈的竞争,从而降低了后者的生长和蛋白质数量。L. paracasei 占主导地位,并击败了其他菊粉利用者,如 L. ruminis PT16、B. longum PT4 和 B. fragilis HM714。L. paracasei 对菊粉消费的高适应性等菌株特异性特征的重要性使其具有细菌竞争力的优势。蛋白质组学研究表明,在共培养物中,菊粉降解酶如β-果糖酶、6-磷酸果糖激酶、PTS D-果糖系统和 ABC 转运体的数量增加。这些结果表明,肠道代谢相互作用取决于菌株,并且可能因菊粉的完全或部分消耗而导致交叉喂养或竞争。某些细菌对菊粉的部分降解有利于共存。然而,当 L. paracasei M38 完全降解纤维时,这种情况就不会发生。这种益生元与 L. paracasei M38 的协同作用可能决定了它作为一种潜在益生菌在宿主中的优势地位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f51b/11126519/d6beaf75f682/12602_2023_10083_Fig1_HTML.jpg

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