Hong Yue-Huan, Huang Hai-Ming, Wu Lian, Storey Kenneth B, Zhang Jia-Yong, Zhang Yong-Pu, Yu Dan-Na
College of Life Sciences, Zhejiang Normal University, Jinhua 321004, China.
Zhoushan Forestry Center, Zhoushan 316021, China.
Animals (Basel). 2023 May 10;13(10):1593. doi: 10.3390/ani13101593.
(Anura: Hylidae) is endemic to China and is distributed across Anhui, Zhejiang, Fujian, Guangdong, Guangxi, Hunan, and Guizhou provinces. The mitogenomes of from two different sites (Jinxiu, Guangxi, and Wencheng, Zhejiang) were sequenced. Phylogenetic analyses were conducted, including 38 mitogenomes of Hylidae from the NCBI database, and assessed the phylogenetic relationship of within the analyzed dataset. Two mitogenomes of showed the typical mitochondrial gene arrangement with 13 protein-coding genes (PCGs), two ribosomal RNA genes (12S rRNA and 16S rRNA), 22 transfer RNA (tRNA) genes, and one non-coding control region (D-loop). The lengths of the 12S rRNA and 16S rRNA genes from both samples (Jinxiu and Wencheng) were 933 bp and 1604 bp, respectively. The genetic distance (-distance transformed into percent) on the basis of the mitogenomes (excluding the control region) of the two samples was calculated as 4.4%. showed a close phylogenetic relationship with the clade of ( + ), which was supported by ML and BI analyses. In the branch-site model, five positive selection sites were found in the clade of and : Cytb protein (at position 316), ND3 protein (at position 85), and ND5 protein (at position 400) have one site, respectively, and two sites in ND4 protein (at positions 47 and 200). Based on the results, we hypothesized that the positive selection of and was due to their experience of cold stress in historical events, but more evidence is needed to support this conclusion.
(无尾目:雨蛙科)为中国特有物种,分布于安徽、浙江、福建、广东、广西、湖南和贵州等省份。对来自两个不同地点(广西金秀和浙江文成)的该物种线粒体基因组进行了测序。开展了系统发育分析,纳入了来自NCBI数据库的38个雨蛙科线粒体基因组,并评估了分析数据集中该物种的系统发育关系。该物种的两个线粒体基因组呈现典型的线粒体基因排列,包含13个蛋白质编码基因(PCGs)、两个核糖体RNA基因(12S rRNA和16S rRNA)、22个转运RNA(tRNA)基因和一个非编码控制区(D-loop)。两个样本(金秀和文成)的12S rRNA和16S rRNA基因长度分别为933 bp和1604 bp。基于两个样本的线粒体基因组(不包括控制区)计算的遗传距离(转换为百分比的距离)为4.4%。该物种与(+)分支显示出密切的系统发育关系,这得到了最大似然法(ML)和贝叶斯推断(BI)分析的支持。在分支位点模型中,在该物种和的分支中发现了五个正选择位点:细胞色素b蛋白(第316位)、ND3蛋白(第85位)和ND5蛋白(第400位)各有一个位点,ND4蛋白有两个位点(第47位和第200位)。基于这些结果,我们推测该物种和的正选择是由于它们在历史事件中经历了冷应激,但还需要更多证据来支持这一结论。