Demir Selcan, Yet Idil, Sardan Ekiz Melis, Sag Erdal, Bilginer Yelda, Celikbicak Omur, Lay Incilay, Ozen Seza
Department of Pediatric Rheumatology, Hacettepe University Medical Faculty, 06230 Ankara, Turkey.
Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, 06230 Ankara, Turkey.
Diagnostics (Basel). 2023 May 12;13(10):1729. doi: 10.3390/diagnostics13101729.
IgA vasculitis (IgAV) is the most common form of childhood vasculitis. A better understanding of its pathophysiology is required to identify new potential biomarkers and treatment targets.
to assess the underlying molecular mechanisms in the pathogenesis of IgAV using an untargeted proteomics approach.
Thirty-seven IgAV patients and five healthy controls were enrolled. Plasma samples were collected on the day of diagnosis before any treatment was initiated. We used nano-liquid chromatography-tandem mass spectrometry (nLC-MS/MS) to investigate the alterations in plasma proteomic profiles. For the bioinformatics analyses, databases including Uniprot, PANTHER, KEGG, Reactome, Cytoscape, and IntAct were used.
Among the 418 proteins identified in the nLC-MS/MS analysis, 20 had significantly different expressions in IgAV patients. Among them, 15 were upregulated and 5 were downregulated. According to the KEGG pathway and function classification analysis, complement and coagulation cascades were the most enriched pathways. GO analyses showed that the differentially expressed proteins were mainly involved in defense/immunity proteins and the metabolite interconversion enzyme family. We also investigated molecular interactions in the identified 20 proteins of IgAV patients. We extracted 493 interactions from the IntAct database for the 20 proteins and used Cytoscape for the network analyses.
Our results clearly suggest the role of the lectin and alternate complement pathways in IgAV. The proteins defined in the pathways of cell adhesion may serve as biomarkers. Further functional studies may lead the way to better understanding of the disease and new therapeutic options for IgAV treatment.
IgA 血管炎(IgAV)是儿童血管炎最常见的形式。需要更好地了解其病理生理学,以识别新的潜在生物标志物和治疗靶点。
使用非靶向蛋白质组学方法评估 IgAV 发病机制中的潜在分子机制。
招募了 37 例 IgAV 患者和 5 例健康对照。在诊断当天且未开始任何治疗之前采集血浆样本。我们使用纳升液相色谱 - 串联质谱(nLC-MS/MS)来研究血浆蛋白质组谱的变化。对于生物信息学分析,使用了包括 Uniprot、PANTHER、KEGG、Reactome、Cytoscape 和 IntAct 在内的数据库。
在 nLC-MS/MS 分析中鉴定出的 418 种蛋白质中,有 20 种在 IgAV 患者中表达有显著差异。其中,15 种上调,5 种下调。根据 KEGG 通路和功能分类分析,补体和凝血级联是最富集的通路。基因本体(GO)分析表明,差异表达的蛋白质主要参与防御/免疫蛋白和代谢物相互转化酶家族。我们还研究了 IgAV 患者鉴定出的 20 种蛋白质中的分子相互作用。我们从 IntAct 数据库中提取了这 20 种蛋白质的 493 种相互作用,并使用 Cytoscape 进行网络分析。
我们的结果清楚地表明了凝集素和替代补体途径在 IgAV 中的作用。细胞黏附途径中定义的蛋白质可能作为生物标志物。进一步的功能研究可能有助于更好地理解该疾病,并为 IgAV 治疗带来新的治疗选择。