Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
NYU School of Medicine, New York, NY 10016, USA.
Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031.
The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular processes as an ordered network of molecular transformations in a single consistent data model, an extended version of a classic metabolic map. Reactome functions both as an archive of biological processes and as a tool for discovering functional relationships in data such as gene expression profiles or somatic mutation catalogs from tumor cells. To extend our ability to annotate human disease processes, we have implemented a new drug class and have used it initially to annotate drugs relevant to cardiovascular disease. Our annotation model depends on external domain experts to identify new areas for annotation and to review new content. New web pages facilitate recruitment of community experts and allow those who have contributed to Reactome to identify their contributions and link them to their ORCID records. To improve visualization of our content, we have implemented a new tool to automatically lay out the components of individual reactions with multiple options for downloading the reaction diagrams and associated data, and a new display of our event hierarchy that will facilitate visual interpretation of pathway analysis results.
Reactome 知识库(https://reactome.org)提供了信号转导、运输、DNA 复制、代谢和其他细胞过程的分子细节,作为一个分子转化的有序网络,在一个单一的一致数据模型中,这是经典代谢图的扩展版本。Reactome 既是生物过程的档案,也是发现基因表达谱或肿瘤细胞体细胞突变目录等数据中功能关系的工具。为了扩展我们注释人类疾病过程的能力,我们实现了一个新的药物类别,并最初使用它来注释与心血管疾病相关的药物。我们的注释模型依赖于外部领域专家来识别新的注释领域,并审查新的内容。新的网页方便了社区专家的招募,并允许那些对 Reactome 有贡献的人识别他们的贡献,并将其链接到他们的 ORCID 记录。为了改善我们内容的可视化,我们实现了一个新的工具,用于自动布局单个反应的组件,提供了多种下载反应图和相关数据的选项,以及我们事件层次结构的新显示,这将有助于视觉解释通路分析结果。
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