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北极冷泉西伯加虫属寡毛纲环节动物体内的细菌共生体多样性

Bacterial symbiont diversity in Arctic seep Oligobrachia siboglinids.

作者信息

Sen Arunima, Tanguy Gwenn, Galand Pierre E, Andersen Ann C, Hourdez Stéphane

机构信息

Department of Arctic Biology, The University Centre in Svalbard (UNIS), Longyearbyen, Norway.

Faculty of Bioscience and Aquaculture, Nord University, Bodø, Norway.

出版信息

Anim Microbiome. 2023 Jun 1;5(1):30. doi: 10.1186/s42523-023-00251-x.

Abstract

BACKGROUND

High latitude seeps are dominated by Oligobrachia siboglinid worms. Since these worms are often the sole chemosymbiotrophic taxon present (they host chemosynthetic bacteria within the trophosome organ in their trunk region), a key question in the study of high latitude seep ecology has been whether they harbor methanotrophic symbionts. This debate has manifested due to the mismatch between stable carbon isotope signatures of the worms (lower than -50‰ and usually indicative of methanotrophic symbioses) and the lack of molecular or microscopic evidence for methanotrophic symbionts. Two hypotheses have circulated to explain this paradox: (1) the uptake of sediment carbon compounds with depleted δC values from the seep environment, and (2) a small, but significant and difficult to detect population of methanotrophic symbionts. We conducted 16S rRNA amplicon sequencing of the V3-V4 regions on two species of northern seep Oligobrachia (Oligobrachia webbi and Oligobrachia sp. CPL-clade), from four different high latitude sites, to investigate the latter hypothesis. We also visually checked the worms' symbiotic bacteria within the symbiont-hosting organ, the trophosome, through transmission electron microscopy.

RESULTS

The vast majority of the obtained reads corresponded to sulfide-oxidizers and only a very small proportion of the reads pertained to methane-oxidizers, which suggests a lack of methanotrophic symbionts. A number of sulfur oxidizing bacterial strains were recovered from the different worms, however, host individuals tended to possess a single strain, or sometimes two closely-related strains. However, strains did not correspond specifically with either of the two Oligobrachia species we investigated. Water depth could play a role in determining local sediment bacterial communities that were opportunistically taken up by the worms. Bacteria were abundant in non-trophosome (and thereby symbiont-free) tissue and are likely epibiotic or tube bacterial communities.

CONCLUSIONS

The absence of methanotrophic bacterial sequences in the trophosome of Arctic and north Atlantic seep Oligobrachia likely indicates a lack of methanotrophic symbionts in these worms, which suggests that nutrition is sulfur-based. This is turn implies that sediment carbon uptake is responsible for the low δC values of these animals. Furthermore, endosymbiotic partners could be locally determined, and possibly only represent a fraction of all bacterial sequences obtained from tissues of these (and other) species of frenulates.

摘要

背景

高纬度渗漏区以寡鳃西伯加虫为主。由于这些蠕虫通常是唯一存在的化学合成共生分类群(它们在躯干区域的营养体器官内寄生着化学合成细菌),高纬度渗漏区生态学研究中的一个关键问题是它们是否含有甲烷营养共生体。这场争论的出现是因为蠕虫的稳定碳同位素特征(低于-50‰,通常表明存在甲烷营养共生关系)与缺乏甲烷营养共生体的分子或微观证据之间存在不匹配。有两种假说流传开来以解释这一矛盾:(1)从渗漏环境中摄取δC值 depleted的沉积物碳化合物,以及(2)存在少量但显著且难以检测到的甲烷营养共生体种群。我们对来自四个不同高纬度地点的两种北方渗漏寡鳃虫(韦伯寡鳃虫和寡鳃虫CPL分支种)的V3-V4区域进行了16S rRNA扩增子测序,以研究后一种假说。我们还通过透射电子显微镜直观地检查了蠕虫在共生体宿主器官营养体内的共生细菌。

结果

绝大多数获得的读数对应于硫化物氧化菌,只有极小比例的读数与甲烷氧化菌有关,这表明缺乏甲烷营养共生体。从不同的蠕虫中分离出了一些硫氧化细菌菌株,然而,宿主个体往往只拥有一种菌株,或者有时是两种密切相关的菌株。然而,这些菌株与我们研究的两种寡鳃虫物种并无特定对应关系。水深可能在决定蠕虫机会性摄取的当地沉积物细菌群落方面发挥作用。细菌在非营养体(因此无共生体)组织中丰富,可能是体表或管内细菌群落。

结论

北极和北大西洋渗漏区寡鳃虫营养体中缺乏甲烷营养细菌序列,这可能表明这些蠕虫中缺乏甲烷营养共生体,这表明营养是以硫为基础的。这反过来意味着沉积物碳的摄取是这些动物δC值 low的原因。此外,内共生伙伴可能是由当地决定的,并且可能只代表从这些(以及其他)缨鳃虫物种组织中获得的所有细菌序列的一小部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc06/10236654/c5310d68e8af/42523_2023_251_Fig1_HTML.jpg

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