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皮下盘菌属的分类学:一个案例研究表明简单的系统发育关系并不总能准确地将物种归入合适的属。

Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera.

作者信息

Shen Shan, Liu Shi-Liang, Zhou Li-Wei

机构信息

State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, People's Republic of China.

University of Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

出版信息

IMA Fungus. 2023 Jun 6;14(1):11. doi: 10.1186/s43008-023-00116-7.

DOI:10.1186/s43008-023-00116-7
PMID:37280628
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10245440/
Abstract

The genus is a special and crucial taxonomic rank compared with others above the species level, because a species has to be placed in a certain genus instead of any other higher ranks. With more and more new species being described, the placements of their generic position are sometimes incorrect due to the simple phylogenies resulting from inappropriate sampling. Here, we focus on the taxonomy of a small wood-inhabiting fungal genus Hyphodermella. With the most comprehensive sampling to date, the phylogenetic position of Hyphodermella within Phanerochaetaceae is rearranged by employing the same ITS and nLSU regions as in previous studies and also the ITS, nLSU, rpb1, rpb2 and tef1α regions. Three species are excluded from Hyphodermella: H. poroides is placed in a newly introduced monotypic genus Pseudohyphodermella, while H. aurantiaca and H. zixishanensis are transferred to Roseograndinia. Hyphodermella suiae is described as a new species from South China and Vietnam. Keys to eight species in Hyphodermella and five in Roseograndinia are provided. Beyond solving the taxonomic issue of Hyphodermella itself, the current study also aims to suggest that all fungal taxonomists especially beginners should keep in mind to sample as many comprehensive taxa as possible in phylogenetic analyses.

摘要

与物种水平以上的其他分类等级相比,属是一个特殊且关键的分类等级,因为一个物种必须被归入某一属,而不是其他任何更高的等级。随着越来越多新物种被描述,由于采样不当导致系统发育简单,它们的属级位置有时会被错误放置。在此,我们聚焦于一个小型木生真菌属——皮盘菌属(Hyphodermella)的分类学研究。通过迄今为止最全面的采样,利用与先前研究相同的ITS和nLSU区域以及ITS、nLSU、rpb1、rpb2和tef1α区域,重新排列了皮盘菌属在拟层孔菌科(Phanerochaetaceae)中的系统发育位置。三个物种被排除在皮盘菌属之外:多孔皮盘菌(H. poroides)被置于一个新引入的单型属——假皮盘菌属(Pseudohyphodermella)中,而橙黄皮盘菌(H. aurantiaca)和紫溪山皮盘菌(H. zixishanensis)被转移到玫瑰大孔菌属(Roseograndinia)。华南和越南的猪皮盘菌(Hyphodermella suiae)被描述为一个新物种。提供了皮盘菌属八个物种和玫瑰大孔菌属五个物种的检索表。除了解决皮盘菌属本身的分类问题外,当前研究还旨在建议所有真菌分类学家,尤其是初学者,在系统发育分析中应牢记尽可能多地采样全面的分类群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/153017c484c7/43008_2023_116_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/87e2d8173924/43008_2023_116_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/2685c8a6081f/43008_2023_116_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/d6616748605a/43008_2023_116_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/c7e7641e1613/43008_2023_116_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/153017c484c7/43008_2023_116_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/87e2d8173924/43008_2023_116_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/2685c8a6081f/43008_2023_116_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/d6616748605a/43008_2023_116_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/c7e7641e1613/43008_2023_116_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53df/10245440/153017c484c7/43008_2023_116_Fig5_HTML.jpg

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本文引用的文献

1
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Persoonia. 2021 Dec;47:178-374. doi: 10.3767/persoonia.2021.47.06. Epub 2021 Dec 24.
2
gen. nov., A Revision of Generic Delimitation in ().新属,()中属级划分的修订。
Front Microbiol. 2022 Jul 12;13:894641. doi: 10.3389/fmicb.2022.894641. eCollection 2022.
3
Outline, Divergence Times, and Phylogenetic Analyses of Trechisporales (Agaricomycetes, Basidiomycota).木层孔菌目(伞菌纲,担子菌门)的概述、分歧时间及系统发育分析
Mycology. 2023 Nov 7;15(2):180-209. doi: 10.1080/21501203.2023.2263031. eCollection 2024.
4
Four New Species and a New Combination of () from Subtropical and Tropical China.来自中国亚热带和热带地区的()的四个新物种及一个新组合。 (原文括号处内容缺失,翻译只能到此程度)
J Fungi (Basel). 2024 May 13;10(5):348. doi: 10.3390/jof10050348.
5
Phylogenetic and Taxonomic Analyses of Five New Wood-Inhabiting Fungi of , and (Basidiomycota) from China.来自中国的、属于担子菌门的五个新的木生真菌(分别来自[具体属名1]、[具体属名2]和[具体属名3])的系统发育和分类分析
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6
fam. nov. (, ) for gen. et sp. nov. and Three New Combinations.新科(用于新属及新种)以及三个新组合
J Fungi (Basel). 2023 Dec 28;10(1):22. doi: 10.3390/jof10010022.
Front Microbiol. 2022 Apr 25;13:818358. doi: 10.3389/fmicb.2022.818358. eCollection 2022.
4
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9
Fungal Diversity Revisited: 2.2 to 3.8 Million Species.真菌多样性再探:220 万至 380 万种。
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