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通过喇曼光学活性和分子动力学监测谷胱甘肽的构象和质子化状态。

Monitoring Conformation and Protonation States of Glutathione by Raman Optical Activity and Molecular Dynamics.

机构信息

Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic.

Department of Analytical Chemistry Faculty of Chemical Engineering, University of Chemistry and Technology, Technická 5, 16628, Prague 6, Czech Republic.

出版信息

Chempluschem. 2023 Nov;88(11):e202300219. doi: 10.1002/cplu.202300219. Epub 2023 Jun 28.

Abstract

Glutathione (GSH) is a common antioxidant and its biological activity depends on the conformation and protonation state. We used molecular dynamics, Raman and Raman optical activity (ROA) spectroscopies to investigate GSH structural changes in a broad pH range. Factor analysis of the spectra provided protonation constants (2.05, 3.45, 8.62, 9.41) in good agreement with previously published values. Following the analysis, spectra of differently protonated forms were obtained by extrapolation. The complete deprotonation of the thiol group above pH 11 was clearly visible in the spectra; however, many spectral features did not change much with pH. Experimental spectra at various pH values were decomposed into the simulated ones, which allowed us to study the conformer populations and quality of molecular dynamics (MD). According to this combined ROA/MD analysis conformation of the GSH backbone is affected by the pH changes only in a limited way. The combination of ROA with the computations thus has the potential to improve the MD force field and obtain more accurate populations of the conformer species. The methodology can be used for any molecule, but for a more detailed insight better computational techniques are needed in the future.

摘要

谷胱甘肽 (GSH) 是一种常见的抗氧化剂,其生物活性取决于构象和质子化状态。我们使用分子动力学、拉曼和拉曼光学活性 (ROA) 光谱学在广泛的 pH 范围内研究 GSH 的结构变化。对光谱的因子分析提供了质子化常数(2.05、3.45、8.62、9.41),与先前发表的值吻合良好。根据分析,通过外推获得了不同质子化形式的光谱。在 pH 值高于 11 时,硫醇基团的完全去质子化在光谱中清晰可见;然而,许多光谱特征随 pH 值变化不大。在各种 pH 值下的实验光谱被分解为模拟光谱,这使我们能够研究构象体的分布和分子动力学 (MD) 的质量。根据这种 ROA/MD 联合分析,GSH 骨架的构象仅在有限的程度上受到 pH 变化的影响。因此,ROA 与计算的结合有可能改进 MD 力场并获得构象体物种更准确的分布。该方法可用于任何分子,但未来需要更好的计算技术来获得更详细的见解。

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