• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于染色体扩增研究的长读长基因组组装: , , ,以及 。

Long-read genome assemblies for the study of chromosome expansion: , , , and .

作者信息

Leung Wilson, Torosin Nicole, Cao Weihuan, Reed Laura K, Arrigo Cindy, Elgin Sarah C R, Ellison Christopher E

机构信息

Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

Department of Genetics and Human Genetics Institute of New Jersey, Rutgers University, Piscataway, NJ 08854, USA.

出版信息

bioRxiv. 2023 May 24:2023.05.22.541758. doi: 10.1101/2023.05.22.541758.

DOI:10.1101/2023.05.22.541758
PMID:37292993
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10245892/
Abstract

Flow cytometry estimates of genome sizes among species of show a 3-fold variation, ranging from ∼127 Mb in to ∼400 Mb in . However, the assembled portion of the Muller F Element (orthologous to the fourth chromosome in ) shows a nearly 14-fold variation in size, ranging from ∼1.3 Mb to > 18 Mb. Here, we present chromosome-level long read genome assemblies for four species with expanded F Elements ranging in size from 2.3 Mb to 20.5 Mb. Each Muller Element is present as a single scaffold in each assembly. These assemblies will enable new insights into the evolutionary causes and consequences of chromosome size expansion.

摘要

流式细胞术对[具体物种名]物种间基因组大小的估计显示出3倍的差异,范围从[具体物种1]的约127兆碱基对到[具体物种2]的约400兆碱基对。然而,穆勒F元件(与[具体物种3]的第四条染色体直系同源)的组装部分在大小上显示出近14倍的差异,范围从约1.3兆碱基对到大于18兆碱基对。在此,我们展示了四个[具体物种名]物种的染色体水平长读长基因组组装,其F元件大小扩展,范围从2.3兆碱基对到20.5兆碱基对。每个穆勒元件在每个组装中都作为单个支架存在。这些组装将为染色体大小扩展的进化原因和后果带来新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/ea4b09929d36/nihpp-2023.05.22.541758v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/70f7d8d81eb3/nihpp-2023.05.22.541758v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/7effd8e647a5/nihpp-2023.05.22.541758v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/a90f6368a9dc/nihpp-2023.05.22.541758v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/2b0f0f2bade2/nihpp-2023.05.22.541758v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/866d91dcf2ff/nihpp-2023.05.22.541758v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/ea4b09929d36/nihpp-2023.05.22.541758v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/70f7d8d81eb3/nihpp-2023.05.22.541758v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/7effd8e647a5/nihpp-2023.05.22.541758v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/a90f6368a9dc/nihpp-2023.05.22.541758v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/2b0f0f2bade2/nihpp-2023.05.22.541758v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/866d91dcf2ff/nihpp-2023.05.22.541758v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c80d/10245892/ea4b09929d36/nihpp-2023.05.22.541758v1-f0006.jpg

相似文献

1
Long-read genome assemblies for the study of chromosome expansion: , , , and .用于染色体扩增研究的长读长基因组组装: , , ,以及 。
bioRxiv. 2023 May 24:2023.05.22.541758. doi: 10.1101/2023.05.22.541758.
2
Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae.用于研究染色体扩张的长读基因组组装:黑腹果蝇、拟暗果蝇、双斑果绳和拟黑腹果蝇。
G3 (Bethesda). 2023 Sep 30;13(10). doi: 10.1093/g3journal/jkad191.
3
Retrotransposons Are the Major Contributors to the Expansion of the Muller F Element.逆转座子是穆勒F因子扩张的主要贡献者。
G3 (Bethesda). 2017 Aug 7;7(8):2439-2460. doi: 10.1534/g3.117.040907.
4
Whole Genome Sequences of 23 Species from the Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses.物种组(双翅目:果蝇科)23个物种的全基因组序列:用于检验进化假说的资源。
G3 (Bethesda). 2020 May 4;10(5):1443-1455. doi: 10.1534/g3.119.400959.
5
Highly Contiguous Genome Assemblies of 15 Species Generated Using Nanopore Sequencing.使用纳米孔测序生成的15个物种的高度连续基因组组装
G3 (Bethesda). 2018 Oct 3;8(10):3131-3141. doi: 10.1534/g3.118.200160.
6
Fluorescence patterns of heterochromatin in mitotic and polytene chromosomes in seven members of three sub-groups of the melanogaster species group of Drosophila.果蝇黑腹果蝇物种组三个亚组的七个成员有丝分裂染色体和多线染色体中异染色质的荧光模式。
Chromosoma. 1980;81(1):137-50. doi: 10.1007/BF00292428.
7
Chromosome-Level Assembly of Reveals Important Karyotypic Transition of the X Chromosome.揭示了 X 染色体重要的核型进化。
G3 (Bethesda). 2020 Mar 5;10(3):891-897. doi: 10.1534/g3.119.400922.
8
The Complexities and Nuances of Analyzing the Genome of and Its Endosymbiont.分析 和其内共生体基因组的复杂性和细微差别。
G3 (Bethesda). 2018 Jan 4;8(1):373-374. doi: 10.1534/g3.117.300164.
9
Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Y Chromosome.富含异染色质的组装揭示了 Y 染色体的序列和结构。
Genetics. 2019 Jan;211(1):333-348. doi: 10.1534/genetics.118.301765. Epub 2018 Nov 12.
10
Long-read-based Genome Assembly of Drosophila gunungcola Reveals Fewer Chemosensory Genes in Flower-breeding Species.基于长读测序的高山果蝇基因组组装揭示了传粉物种中较少的化感器基因。
Genome Biol Evol. 2023 Mar 3;15(3). doi: 10.1093/gbe/evad048.

本文引用的文献

1
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline.格雷伯爵茶:一个全自动、用户友好的转座元件注释和分析流程。
Mol Biol Evol. 2024 Apr 2;41(4). doi: 10.1093/molbev/msae068.
2
The UCSC Genome Browser database: 2023 update.UCSC 基因组浏览器数据库:2023 年更新。
Nucleic Acids Res. 2023 Jan 6;51(D1):D1188-D1195. doi: 10.1093/nar/gkac1072.
3
TimeTree 5: An Expanded Resource for Species Divergence Times.TimeTree 5:物种分化时间的扩展资源。
Mol Biol Evol. 2022 Aug 6;39(8). doi: 10.1093/molbev/msac174.
4
Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement.内共生体基因组在昆虫常染色体中的积累,随后是内共生体的替换。
Curr Biol. 2022 Jun 20;32(12):2786-2795.e5. doi: 10.1016/j.cub.2022.05.024. Epub 2022 Jun 6.
5
FlyBase: a guided tour of highlighted features.FlyBase:特色功能导览
Genetics. 2022 Apr 4;220(4). doi: 10.1093/genetics/iyac035.
6
Widespread introgression across a phylogeny of 155 Drosophila genomes.155 个果蝇基因组系统发育树上的广泛基因渗入。
Curr Biol. 2022 Jan 10;32(1):111-123.e5. doi: 10.1016/j.cub.2021.10.052. Epub 2021 Nov 16.
7
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics.双翅目:果蝇系统发育和分类学资源。
Genome Biol Evol. 2021 Aug 3;13(8). doi: 10.1093/gbe/evab179.
8
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.BUSCO 更新:用于真核生物、原核生物和病毒基因组评分的新颖且简化的工作流程以及更广泛和更深的系统发育覆盖范围。
Mol Biol Evol. 2021 Sep 27;38(10):4647-4654. doi: 10.1093/molbev/msab199.
9
Highly contiguous assemblies of 101 drosophilid genomes.101 种果蝇基因组的高连续组装。
Elife. 2021 Jul 19;10:e66405. doi: 10.7554/eLife.66405.
10
Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads.Hapo-G:利用准确读段对基因组组装进行单倍型感知的优化
NAR Genom Bioinform. 2021 May 3;3(2):lqab034. doi: 10.1093/nargab/lqab034. eCollection 2021 Jun.