Department of Agricultural Science, Technical and Vocational University (TVU), Tehran, Iran.
Biophysics Department, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran.
Biomed Res Int. 2023 Jun 7;2023:3763634. doi: 10.1155/2023/3763634. eCollection 2023.
Visceral leishmaniasis is a life-threatening infectious disease worldwide. Extensive experiments have been done to introduce potential vaccine candidates to combat leishmaniasis. The present study was done to evaluate hydrophilic acylated surface protein B1 as a potential vaccine candidate using methods. For this aim, server-based predictions were performed regarding physicochemical characteristics, solubility, antigenicity, allergenicity, signal peptide, transmembrane domain, and posttranslational modifications (PTMs). Also, secondary and tertiary structures were predicted using NetSurfP-3.0 and I-TASSER, respectively. The 3D model was further subjected to refinement and validation, and promising B-cell, cytotoxic T-lymphocyte (CTL; human, dog), and helper T-lymphocyte (HTL; human) epitopes were predicted. The protein had a molecular weight of 42.19 kDa, with high solubility (0.749), stability (instability index: 21.34), and hydrophilicity (GRAVY: -2.322). No signal peptide or transmembrane domain was predicted, and the most abundant PTMs were phosphorylation, O-glycosylation, and acetylation. Many coils and disordered regions existed in the secondary structure analysis, and the tertiary model had a good confidence score (-0.79). Next, the ProSA-web and PROCHECK tools showed adequate improvements in the refined model compared to the crude model. Only 4 shared B-cell epitopes among three web servers (ABCpred, BepiPred 2.0, and SVMTriP) were shown to be antigenic, nonallergenic, and with good water solubility. Also, five potent CTL epitopes in dogs and five in humans were predicted. Notably, two HTL epitopes were found to be potential IFN- inducers. In conclusion, our results demonstrated several immunogenic epitopes in this protein, which could be directed towards multiepitope vaccine design.
内脏利什曼病是一种危及生命的全球传染病。已经进行了广泛的实验,以引入潜在的疫苗候选物来对抗利什曼病。本研究旨在使用方法评估亲水性酰化表面蛋白 B1 作为潜在的疫苗候选物。为此,针对理化特性、溶解度、抗原性、变应原性、信号肽、跨膜结构域和翻译后修饰(PTMs)进行了基于服务器的预测。此外,分别使用 NetSurfP-3.0 和 I-TASSER 预测了二级和三级结构。进一步对 3D 模型进行了细化和验证,并预测了有希望的 B 细胞、细胞毒性 T 淋巴细胞(CTL;人、犬)和辅助性 T 淋巴细胞(HTL;人)表位。该蛋白的分子量为 42.19 kDa,具有高溶解度(0.749)、稳定性(不稳定性指数:21.34)和亲水性(GRAVY:-2.322)。未预测到信号肽或跨膜结构域,最丰富的 PTM 是磷酸化、O-糖基化和乙酰化。二级结构分析中存在许多线圈和无序区域,三级模型具有良好的置信度评分(-0.79)。接下来,ProSA-web 和 PROCHECK 工具显示,与原始模型相比,细化模型有了适当的改进。仅在三个网络服务器(ABCpred、BepiPred 2.0 和 SVMTriP)中显示 4 个共享 B 细胞表位具有抗原性、非变应原性和良好的水溶性。此外,还预测了犬类的 5 个有效 CTL 表位和人类的 5 个有效 CTL 表位。值得注意的是,发现了 2 个 HTL 表位是潜在的 IFN-诱导剂。总之,我们的研究结果表明,该蛋白中存在多个免疫原性表位,可用于多表位疫苗设计。