文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

非小细胞肺癌血浆中的细胞外RNA谱

Extracellular RNA profiles in non-small cell lung cancer plasma.

作者信息

Ni Yaojun, Zhang Wenhao, Mu Guang, Gu Yan, Wang Hongchang, Wei Ke, Xia Yang, Xie Xueying, Ge Qinyu, Tan Tan, Wang Jun

机构信息

Department of Thoracic Surgery, Jiangsu Province People's Hospital and the First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

Department of Thoracic Surgery, Huai'an First Hospital Affiliated to Nanjing Medical University, Huai'an, China.

出版信息

J Thorac Dis. 2023 May 30;15(5):2742-2753. doi: 10.21037/jtd-23-517. Epub 2023 May 25.


DOI:10.21037/jtd-23-517
PMID:37324105
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10267934/
Abstract

BACKGROUND: Non-small cell lung cancer (NSCLC) has a high mortality rate and poor prognosis. The early detection of high-risk patients is essential to improve patient prognosis. Thus, the identification of a non-invasive, non-radiative, convenient, and fast diagnostic approach should be a top priority in NSCLC research. Circulating extracellular RNAs (exRNAs) in the plasma are potential biomarkers for NSCLC. METHODS: We used RNA-sequencing (RNA-seq) technology to explore the NSCLC-related RNAs, especially the circular RNAs (circRNAs). The circRNA-targeted micro RNAs (miRNAs) were predicted using 3 circRNA databases [i.e., the Cancer-Specific CircRNA Database (CSCD), circBank, and Circular RNA Interactome]. The circRNA-miRNA-messenger RNA (mRNA) network was constructed using Cytoscape V3.8.0 (Cytoscape Consortium, San Diego, CA, USA). The expression levels of some differentially expressed genes were validated by a quantitative real-time polymerase chain reaction (qRT-PCR) analysis. RESULTS: The results showed that the RNA biotypes of the mitochondrial ribosomal RNAs (mt-rRNAs) and mitochondrial transfer RNAs (mt-tRNAs) were upregulated in the NSCLC plasma. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) terms of the differentially expressed transcripts of NSCLC included oxidative phosphorylation, proton transmembrane transport, and the response to oxidative stress. Additionally, the qRT-PCR validation indicated that hsa_circ_0000722 had significantly higher expression in the NSCLC plasma than the control plasma, but hsa_circ_0006156 did not differ between the NSCLC plasma and the control plasma. The expression levels of miR-324-5p and miR-326 were higher in the NSCLC plasma than the control plasma. CONCLUSIONS: In this study, an exRNA-sequencing strategy was used to identify the expression of NSCLC-specific transcription factors in clinical plasma samples, and hsa_circ_0000722 and hsa-miR-324-5p were identified as potential biomarkers in NSCLC.

摘要

背景:非小细胞肺癌(NSCLC)死亡率高且预后较差。早期发现高危患者对于改善患者预后至关重要。因此,确定一种非侵入性、无辐射、便捷且快速的诊断方法应是NSCLC研究的首要任务。血浆中的循环细胞外RNA(exRNA)是NSCLC的潜在生物标志物。 方法:我们使用RNA测序(RNA-seq)技术探索与NSCLC相关的RNA,尤其是环状RNA(circRNA)。使用3个circRNA数据库[即癌症特异性circRNA数据库(CSCD)、circBank和环状RNA相互作用组]预测circRNA靶向的微小RNA(miRNA)。使用Cytoscape V3.8.0(美国加利福尼亚州圣地亚哥的Cytoscape联盟)构建circRNA-miRNA-信使RNA(mRNA)网络。通过定量实时聚合酶链反应(qRT-PCR)分析验证了一些差异表达基因的表达水平。 结果:结果显示,NSCLC血浆中线粒体核糖体RNA(mt-rRNA)和线粒体转运RNA(mt-tRNA)的RNA生物型上调。NSCLC差异表达转录本的基因本体论(GO)和京都基因与基因组百科全书(KEGG)术语包括氧化磷酸化、质子跨膜转运以及对氧化应激的反应。此外,qRT-PCR验证表明,hsa_circ_0000722在NSCLC血浆中的表达明显高于对照血浆,但hsa_circ_0006156在NSCLC血浆和对照血浆之间没有差异。NSCLC血浆中miR-324-5p和miR-326的表达水平高于对照血浆。 结论:在本研究中,采用exRNA测序策略来鉴定临床血浆样本中NSCLC特异性转录因子的表达,并且hsa_circ_0000722和hsa-miR-324-5p被鉴定为NSCLC中的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/d2327f17bbbc/jtd-15-05-2742-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/6e92bbc011b7/jtd-15-05-2742-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/77008250ff7d/jtd-15-05-2742-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/76dfd9da5780/jtd-15-05-2742-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/6d2cf6a813a5/jtd-15-05-2742-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/a5a276ea392a/jtd-15-05-2742-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/00aaeae55ce1/jtd-15-05-2742-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/d2327f17bbbc/jtd-15-05-2742-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/6e92bbc011b7/jtd-15-05-2742-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/77008250ff7d/jtd-15-05-2742-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/76dfd9da5780/jtd-15-05-2742-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/6d2cf6a813a5/jtd-15-05-2742-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/a5a276ea392a/jtd-15-05-2742-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/00aaeae55ce1/jtd-15-05-2742-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d083/10267934/d2327f17bbbc/jtd-15-05-2742-f7.jpg

相似文献

[1]
Extracellular RNA profiles in non-small cell lung cancer plasma.

J Thorac Dis. 2023-5-30

[2]
Bioinformatics Analysis Predicts hsa_circ_0026337/miR-197-3p as a Potential Oncogenic ceRNA Network for Non-Small Cell Lung Cancers.

Anticancer Agents Med Chem. 2022

[3]
Construction of a circular RNA-microRNA-messenger RNA regulatory network of hsa_circ_0043256 in lung cancer by integrated analysis.

Thorac Cancer. 2022-1

[4]
Construction of circRNA-miRNA-mRNA network and identification of novel potential biomarkers for non-small cell lung cancer.

Cancer Cell Int. 2021-11-20

[5]
Identification of Prostate Cancer-Related Circular RNA Through Bioinformatics Analysis.

Front Genet. 2020-8-14

[6]
Identification of circRNA-miRNA-mRNA network in luminal breast cancers by integrated analysis of microarray datasets.

Front Mol Biosci. 2023-4-28

[7]
Identification of potential circular RNA biomarkers in lung adenocarcinoma: A bioinformatics analysis and retrospective clinical study.

Oncol Lett. 2022-5

[8]
A comprehensive evaluation of skin aging-related circular RNA expression profiles.

J Clin Lab Anal. 2021-4

[9]
Identification of potentially functional circular RNAs hsa_circ_0070934 and hsa_circ_0004315 as prognostic factors of hepatocellular carcinoma by integrated bioinformatics analysis.

Sci Rep. 2022-3-23

[10]
Expression profile and bioinformatics analysis of circular RNAs in acute ischemic stroke in a South Chinese Han population.

Sci Rep. 2020-6-23

本文引用的文献

[1]
The prognosis of non-small cell lung cancer patients according to endobronchial metastatic lesion.

Sci Rep. 2022-8-10

[2]
Circ_0001058 represses the progression of lung adenocarcinoma through governing of the miR-486-5p/TEK signaling axis.

Anticancer Drugs. 2022-9-1

[3]
Yellow Fever Molecular Diagnosis Using Urine Specimens during Acute and Convalescent Phases of the Disease.

J Clin Microbiol. 2022-8-17

[4]
Pathological Response and Immune Biomarker Assessment in Non-Small-Cell Lung Carcinoma Receiving Neoadjuvant Immune Checkpoint Inhibitors.

Cancers (Basel). 2022-6-2

[5]
Multiplexed mRNA analysis of brain-derived extracellular vesicles upon experimental stroke in mice reveals increased mRNA content with potential relevance to inflammation and recovery processes.

Cell Mol Life Sci. 2022-5-31

[6]
Plasma extracellular vesicle long RNA profiling identifies a diagnostic signature for stage I lung adenocarcinoma.

Transl Lung Cancer Res. 2022-4

[7]
The Polymorphism and Expression of EGFL7 and miR-126 Are Associated With NSCLC Susceptibility.

Front Oncol. 2022-4-14

[8]
Non-Small-Cell Lung Cancer in 2022: A Review for General Practitioners in Oncology.

Curr Oncol. 2022-3-9

[9]
Efficacy and safety of pyrotinib in advanced lung adenocarcinoma with HER2 mutations: a multicenter, single-arm, phase II trial.

BMC Med. 2022-2-1

[10]
Plasma microRNA Interindividual Variability in Healthy Individuals, Pregnant Women, and an Individual with a Stably Altered Neuroendocrine Phenotype.

Clin Chem. 2021-11-26

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索