Ni Yaojun, Zhang Wenhao, Mu Guang, Gu Yan, Wang Hongchang, Wei Ke, Xia Yang, Xie Xueying, Ge Qinyu, Tan Tan, Wang Jun
Department of Thoracic Surgery, Jiangsu Province People's Hospital and the First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Department of Thoracic Surgery, Huai'an First Hospital Affiliated to Nanjing Medical University, Huai'an, China.
J Thorac Dis. 2023 May 30;15(5):2742-2753. doi: 10.21037/jtd-23-517. Epub 2023 May 25.
BACKGROUND: Non-small cell lung cancer (NSCLC) has a high mortality rate and poor prognosis. The early detection of high-risk patients is essential to improve patient prognosis. Thus, the identification of a non-invasive, non-radiative, convenient, and fast diagnostic approach should be a top priority in NSCLC research. Circulating extracellular RNAs (exRNAs) in the plasma are potential biomarkers for NSCLC. METHODS: We used RNA-sequencing (RNA-seq) technology to explore the NSCLC-related RNAs, especially the circular RNAs (circRNAs). The circRNA-targeted micro RNAs (miRNAs) were predicted using 3 circRNA databases [i.e., the Cancer-Specific CircRNA Database (CSCD), circBank, and Circular RNA Interactome]. The circRNA-miRNA-messenger RNA (mRNA) network was constructed using Cytoscape V3.8.0 (Cytoscape Consortium, San Diego, CA, USA). The expression levels of some differentially expressed genes were validated by a quantitative real-time polymerase chain reaction (qRT-PCR) analysis. RESULTS: The results showed that the RNA biotypes of the mitochondrial ribosomal RNAs (mt-rRNAs) and mitochondrial transfer RNAs (mt-tRNAs) were upregulated in the NSCLC plasma. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) terms of the differentially expressed transcripts of NSCLC included oxidative phosphorylation, proton transmembrane transport, and the response to oxidative stress. Additionally, the qRT-PCR validation indicated that hsa_circ_0000722 had significantly higher expression in the NSCLC plasma than the control plasma, but hsa_circ_0006156 did not differ between the NSCLC plasma and the control plasma. The expression levels of miR-324-5p and miR-326 were higher in the NSCLC plasma than the control plasma. CONCLUSIONS: In this study, an exRNA-sequencing strategy was used to identify the expression of NSCLC-specific transcription factors in clinical plasma samples, and hsa_circ_0000722 and hsa-miR-324-5p were identified as potential biomarkers in NSCLC.
背景:非小细胞肺癌(NSCLC)死亡率高且预后较差。早期发现高危患者对于改善患者预后至关重要。因此,确定一种非侵入性、无辐射、便捷且快速的诊断方法应是NSCLC研究的首要任务。血浆中的循环细胞外RNA(exRNA)是NSCLC的潜在生物标志物。 方法:我们使用RNA测序(RNA-seq)技术探索与NSCLC相关的RNA,尤其是环状RNA(circRNA)。使用3个circRNA数据库[即癌症特异性circRNA数据库(CSCD)、circBank和环状RNA相互作用组]预测circRNA靶向的微小RNA(miRNA)。使用Cytoscape V3.8.0(美国加利福尼亚州圣地亚哥的Cytoscape联盟)构建circRNA-miRNA-信使RNA(mRNA)网络。通过定量实时聚合酶链反应(qRT-PCR)分析验证了一些差异表达基因的表达水平。 结果:结果显示,NSCLC血浆中线粒体核糖体RNA(mt-rRNA)和线粒体转运RNA(mt-tRNA)的RNA生物型上调。NSCLC差异表达转录本的基因本体论(GO)和京都基因与基因组百科全书(KEGG)术语包括氧化磷酸化、质子跨膜转运以及对氧化应激的反应。此外,qRT-PCR验证表明,hsa_circ_0000722在NSCLC血浆中的表达明显高于对照血浆,但hsa_circ_0006156在NSCLC血浆和对照血浆之间没有差异。NSCLC血浆中miR-324-5p和miR-326的表达水平高于对照血浆。 结论:在本研究中,采用exRNA测序策略来鉴定临床血浆样本中NSCLC特异性转录因子的表达,并且hsa_circ_0000722和hsa-miR-324-5p被鉴定为NSCLC中的潜在生物标志物。
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