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靶向 SARS-CoV-2 主蛋白酶(MPro)的激酶抑制剂:发现针对 SARS-CoV-2 的抗病毒和抗炎分子的有前途的方法。

Targeting SARS-CoV-2 Main Protease (MPro) with Kinase Inhibitors: A Promising Approach for Discovering Antiviral and Anti-inflammatory Molecules against SARS-CoV-2.

机构信息

Biotechnology Graduate Program, Universidade do Vale do Taquari (Univates), Lajeado CEP 95914-014, Brazil.

Department of Pharmaceutical and Medicinal Chemistry, Institute of Pharmaceutical Sciences, Eberhard Karls Universität Tübingen, Tübingen 72076, Germany.

出版信息

J Chem Inf Model. 2023 Jul 10;63(13):4138-4146. doi: 10.1021/acs.jcim.3c00324. Epub 2023 Jun 17.

DOI:10.1021/acs.jcim.3c00324
PMID:37329322
Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus infected over 688 million people worldwide, causing public health concern and approximately 6.8 million deaths due to COVID-19. COVID-19, especially severe cases, is characterized by exacerbated lung inflammation with an increase of pro-inflammatory cytokines. In addition to antiviral drugs, there is a need for anti-inflammatory therapies to treat all phases of COVID-19. One of the most attractive drug targets for COVID-19 is the SARS-CoV-2 main protease (MPro), an enzyme responsible for cleaving polyproteins formed after the translation of viral RNA, which is essential for viral replication. MPro inhibitors, therefore, have the potential to stop viral replication and act as antiviral drugs. Considering that several kinase inhibitors are known for their action in inflammatory pathways, this could also be investigated toward a potential anti-inflammatory treatment for COVID-19. Therefore, the use of kinase inhibitors against SARS-CoV-2 MPro may be a promising strategy to find molecules with dual activity─antiviral and anti-inflammatory. Considering this, the potential of six kinase inhibitors against SARS-CoV-2 MPro were evaluated in silico and in vitro, including Baricitinib, Tofacitinib, Ruxolitinib, BIRB-796, Skepinone-L, and Sorafenib. To assess the inhibitory potential of the kinase inhibitors, a continuous fluorescent-based enzyme activity assay was optimized with SARS-CoV-2 MPro and MCA-AVLQSGFR-K(Dnp)-K-NH2 (substrate). BIRB-796 and Baricitinib were identified as inhibitors of SARS-CoV-2 MPro, presenting IC values of 7.99 and 25.31 μM, respectively. As they are also known for their anti-inflammatory action, both are prototype compounds with the potential to present antiviral and anti-inflammatory activity against SARS-CoV-2 infection.

摘要

严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)病毒已在全球范围内感染超过 6.88 亿人,引发了公共卫生关注,并导致约 680 万人死于 COVID-19。COVID-19,特别是重症病例,其特征是肺部炎症加剧,促炎细胞因子增加。除了抗病毒药物外,还需要抗炎疗法来治疗 COVID-19 的所有阶段。COVID-19 最具吸引力的药物靶标之一是 SARS-CoV-2 主要蛋白酶(MPro),这是一种负责切割病毒 RNA 翻译后形成的多蛋白的酶,对病毒复制至关重要。因此,MPro 抑制剂有可能阻止病毒复制并作为抗病毒药物发挥作用。考虑到几种激酶抑制剂因其在炎症途径中的作用而为人所知,因此也可以针对 COVID-19 的潜在抗炎治疗进行研究。因此,针对 SARS-CoV-2 MPro 使用激酶抑制剂可能是寻找具有双重活性(抗病毒和抗炎)的分子的有前途的策略。考虑到这一点,评估了六种激酶抑制剂(巴瑞替尼、托法替尼、芦可替尼、BIRB-796、Skepinone-L 和索拉非尼)对 SARS-CoV-2 MPro 的体外和体内抑制潜力。为了评估激酶抑制剂的抑制潜力,使用 SARS-CoV-2 MPro 和 MCA-AVLQSGFR-K(Dnp)-K-NH2(底物)优化了连续荧光酶活性测定法。BIRB-796 和巴瑞替尼被鉴定为 SARS-CoV-2 MPro 的抑制剂,其 IC 值分别为 7.99 和 25.31 μM。由于它们也因其抗炎作用而为人所知,因此它们都是具有针对 SARS-CoV-2 感染的抗病毒和抗炎活性的原型化合物。

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