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在大学校园人群中,SARS-CoV-2社区传播和散发感染阶段建筑物层面污水监测的有效性。

Effectiveness of building-level sewage surveillance during both community-spread and sporadic-infection phases of SARS-CoV-2 in a university campus population.

作者信息

Johnson William, Reeves Katelyn, Liebig Jennifer, Feula Antonio, Butler Claire, Alkire Michaela, Singh Samiha, Litton Shelby, O'Conor Kerry, Jones Keaton, Ortega Nikolas, Shimek Trace, Witteman Julia, Bjorkman Kristen K, Mansfeldt Cresten

机构信息

Department of Civil, Environmental, and Architectural Engineering, University of Colorado Boulder, 1111 Engineering Drive, Boulder, CO 80309, United States.

Environmental Engineering Program, University of Colorado Boulder, 4001 Discovery Drive, Boulder, CO 80303, United States.

出版信息

FEMS Microbes. 2022 Sep 24;3:xtac024. doi: 10.1093/femsmc/xtac024. eCollection 2022.

Abstract

Pathogen surveillance within wastewater rapidly progressed during the SARS-CoV-2 pandemic and informed public health management. In addition to the successful monitoring of entire sewer catchment basins at the treatment facility scale, subcatchment or building-level monitoring enabled targeted support of resource deployment. However, optimizing the temporal and spatial resolution of these monitoring programs remains complex due to population dynamics and within-sewer physical, chemical, and biological processes. To address these limitations, this study explores the advancement of the building-scale network that monitored the on-campus residential population at the University of Colorado Boulder between August 2020 and May 2021 through a daily SARS-CoV-2 surveillance campaign. During the study period, SARS-CoV-2 infection prevalence transitioned from robust community spread in Fall 2020 to sporadic infections in Spring 2021. Temporally, these distinct phases enabled investigating the effectiveness of resource commitment by exploring subsets of the original daily sampling data. Spatially, select sampling sites were installed along the flow path of the pipe network, enabling the exploration of the conservation of viral concentrations within the wastewater. Infection prevalence and resource commitment for informed action displayed an inverted relationship: higher temporal and spatial resolution surveillance is more imperative during sporadic infection phases than during high prevalence periods. This relationship was reinforced when norovirus (two minor clusters) and influenza (primarily absent) were additionally surveilled at a weekly frequency. Overall, resource commitment should scale to meet the objectives of the monitoring campaign-providing a general prevalence estimate requires fewer resources than an early-warning and targeted-action monitoring framework.

摘要

在新冠疫情期间,污水中的病原体监测迅速发展,并为公共卫生管理提供了信息。除了在污水处理设施规模上成功监测整个下水道集水区外,子集水区或建筑层面的监测还能为资源调配提供有针对性的支持。然而,由于人口动态以及下水道内的物理、化学和生物过程,优化这些监测项目的时间和空间分辨率仍然很复杂。为了解决这些限制,本研究探索了2020年8月至2021年5月期间通过每日新冠病毒监测活动对科罗拉多大学博尔德分校校内居住人口进行监测的建筑规模网络的进展情况。在研究期间,新冠病毒感染率从2020年秋季的广泛社区传播转变为2021年春季的零星感染。在时间上,这些不同阶段使得通过探索原始每日采样数据的子集来研究资源投入的有效性成为可能。在空间上,沿着管网的水流路径设置了选定的采样点,从而能够探索污水中病毒浓度的守恒情况。感染率和用于明智行动的资源投入呈现出一种反向关系:在零星感染阶段,比在高感染率时期更迫切需要更高的时间和空间分辨率监测。当每周额外监测诺如病毒(两个小集群)和流感(基本未出现)时,这种关系得到了加强。总体而言,资源投入应根据监测活动的目标进行调整——提供总体感染率估计所需的资源比早期预警和有针对性行动的监测框架要少。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30c1/10117889/59d09f3d8491/xtac024fig1.jpg

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