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水分含量和膳食有机碳丰富度对蚯蚓肠道细菌的影响。

Impact of water content and dietary organic carbon richness on gut bacteria in the earthworm .

作者信息

Zeibich Lydia, Guhl Jennifer, Drake Harold L

机构信息

Department of Ecological Microbiology, University of Bayreuth, Dr.-Hans-Frisch Strasse 1-3, 95440 Bayreuth, Germany.

出版信息

FEMS Microbes. 2020 Oct 9;1(1):xtaa002. doi: 10.1093/femsmc/xtaa002. eCollection 2020 Sep.

Abstract

Many higher and lower animal gut ecosystems have complex resident microbial communities. In contrast, ingested soil is the primary source of the gut microbial diversity of earthworms, invertebrates of fundamental importance to the terrestrial biosphere. Earthworms also harbor a few endemic bacteria including -affiliated Lumbricincola of unknown function. Gut microbes are subject to nutrient fluctuations due to dilution effects during gut passage, the nutrient richness of the anoxic gut, and dietary organic carbon, factors that could alter their activity/detection. This study's objective was to assess the potential impact of these factors on the occurrence and activity of ingested and endemic bacteria in gut content of . Fermentation product profiles of anoxic undiluted and diluted gut content treatments were similar, suggesting that experimental increase in water content and nutrient dilution had marginal impact on fermentation. However, 16S ribosomal Ribonucleic Acid (16S rRNA) sequence abundances indicated that stimulated bacterial taxa were not identical in undiluted and diluted treatments, with dominate potentially functionally redundant phylotypes being affiliated to the , and . Although the earthworm-associated were not stimulated in these treatments, the occurrence of three -affiliated phylotypes varied with the organic carbon richness of the earthworm diet, with two phylotypes being associated with high organic carbon richness. 16S rRNA sequence abundances indicated that other dominant gut taxa also varied with dietary organic carbon richness. These findings illustrate that functionally redundant ingested bacteria and earthworm-associated might be influenced by nutrient fluctuations in the gut and organic carbon richness of the earthworm diet.

摘要

许多高等和低等动物的肠道生态系统都有复杂的常驻微生物群落。相比之下,摄入的土壤是蚯蚓肠道微生物多样性的主要来源,蚯蚓是对陆地生物圈至关重要的无脊椎动物。蚯蚓还含有一些特有细菌,包括功能未知的与Lumbricincola相关的细菌。由于肠道通过过程中的稀释作用、缺氧肠道的营养丰富度以及饮食有机碳等因素,肠道微生物会受到营养波动的影响,这些因素可能会改变它们的活性/检测结果。本研究的目的是评估这些因素对蚯蚓肠道内容物中摄入细菌和特有细菌的出现及活性的潜在影响。缺氧未稀释和稀释后的肠道内容物处理的发酵产物谱相似,这表明实验性增加含水量和营养稀释对发酵的影响很小。然而,16S核糖体核糖核酸(16S rRNA)序列丰度表明,未稀释和稀释处理中受刺激的细菌类群并不相同,主要的潜在功能冗余系统发育型与、和相关。尽管在这些处理中与蚯蚓相关的未受到刺激,但三种与相关的系统发育型的出现随蚯蚓饮食中有机碳的丰富度而变化,其中两种系统发育型与高有机碳丰富度相关。16S rRNA序列丰度表明,其他主要的肠道类群也随饮食有机碳丰富度而变化。这些发现表明,功能冗余的摄入细菌和与蚯蚓相关的可能会受到肠道营养波动和蚯蚓饮食有机碳丰富度的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1df/10117435/cbc877d2b301/xtaa002fig1.jpg

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