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与冰川冰虫Mesenchytraeus solifugus相关的细菌微生物群普查。

Census of bacterial microbiota associated with the glacier ice worm Mesenchytraeus solifugus.

作者信息

Murakami Takumi, Segawa Takahiro, Bodington Dylan, Dial Roman, Takeuchi Nozomu, Kohshima Shiro, Hongoh Yuichi

机构信息

Department of Biological Sciences, Tokyo Institute of Technology, Tokyo 152-8550, Japan

National Institute of Polar Research, Tokyo 190-8518, Japan Transdisciplinary Research Integration Center, Tokyo 190-8518, Japan.

出版信息

FEMS Microbiol Ecol. 2015 Mar;91(3). doi: 10.1093/femsec/fiv003. Epub 2015 Jan 11.

Abstract

The glacier ice worm, Mesenchytraeus solifugus, is a unique annelid, inhabiting only snow and ice in North American glaciers. Here, we analyzed the taxonomic composition of bacteria associated with M. solifugus based on the 16S rRNA gene. We analyzed four fixed-on-site and 10 starved ice worm individuals, along with glacier surface samples. In total, 1341 clones of 16S rRNA genes were analyzed for the ice worm samples, from which 65 bacterial phylotypes (99.0% cut-off) were identified. Of these, 35 phylotypes were closely related to sequences obtained from their habitat glacier and/or other components of cryosphere; whereas three dominant phylotypes were affiliated with animal-associated lineages of the class Mollicutes. Among the three, phylotype Ms-13 shared less than 89% similarity with database sequences and was closest to a gut symbiont of a terrestrial earthworm. Using fluorescence in situ hybridization, Ms-13 was located on the gut wall surface of the ice worms. We propose a novel genus and species, 'Candidatus Vermiplasma glacialis', for this bacterium. Our results raise the possibility that the ice worm has exploited indigenous glacier bacteria, while several symbiotic bacterial lineages have maintained their association with the ice worm during the course of adaptive evolution to the permanently cold environment.

摘要

冰川冰虫(Mesenchytraeus solifugus)是一种独特的环节动物,仅栖息于北美冰川的冰雪之中。在此,我们基于16S rRNA基因分析了与冰川冰虫相关的细菌的分类组成。我们分析了4个固定在现场的和10个饥饿的冰虫个体,以及冰川表面样本。总共对冰虫样本的1341个16S rRNA基因克隆进行了分析,从中鉴定出65个细菌系统型(截止相似度为99.0%)。其中,35个系统型与从它们栖息的冰川和/或冰冻圈的其他成分中获得的序列密切相关;而三个优势系统型隶属于柔膜菌纲与动物相关的谱系。在这三个系统型中,系统型Ms - 13与数据库序列的相似度低于89%,并且与一种陆生蚯蚓的肠道共生菌最为接近。通过荧光原位杂交,Ms - 13定位在冰虫的肠壁表面。我们为此细菌提出了一个新的属和种,即“候选冰川蠕虫菌(Candidatus Vermiplasma glacialis)”。我们的研究结果增加了冰虫利用本地冰川细菌的可能性,同时在适应永久寒冷环境的进化过程中,几种共生细菌谱系一直与冰虫保持着联系。

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