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利用转录组数据分析 COVID-19 与白塞病之间的潜在关系。

Analysis of the potential relationship between COVID-19 and Behcet's disease using transcriptome data.

机构信息

Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an, China.

Department of General Dentistry, College of Stomatology, Xi'an Jiaotong University, Xi'an, China.

出版信息

Medicine (Baltimore). 2023 May 19;102(20):e33821. doi: 10.1097/MD.0000000000033821.

Abstract

To investigate the potential role of COVID-19 in relation to Behcet's disease (BD) and to search for relevant biomarkers. We used a bioinformatics approach to download transcriptomic data from peripheral blood mononuclear cells (PBMCs) of COVID-19 patients and PBMCs of BD patients, screened the common differential genes between COVID-19 and BD, performed gene ontology (GO) and pathway analysis, and constructed the protein-protein interaction (PPI) network, screened the hub genes and performed co-expression analysis. In addition, we constructed the genes-transcription factors (TFs)-miRNAs network, the genes-diseases network and the genes-drugs network to gain insight into the interactions between the 2 diseases. We used the RNA-seq dataset from the GEO database (GSE152418, GSE198533). We used cross-analysis to obtain 461 up-regulated common differential genes and 509 down-regulated common differential genes, mapped the PPI network, and used Cytohubba to identify the 15 most strongly associated genes as hub genes (ACTB, BRCA1, RHOA, CCNB1, ASPM, CCNA2, TOP2A, PCNA, AURKA, KIF20A, MAD2L1, MCM4, BUB1, RFC4, and CENPE). We screened for statistically significant hub genes and found that ACTB was in low expression of both BD and COVID-19, and ASPM, CCNA2, CCNB1, and CENPE were in low expression of BD and high expression of COVID-19. GO analysis and pathway analysis was then performed to obtain common pathways and biological response processes, which suggested a common association between BD and COVID-19. The genes-TFs-miRNAs network, genes-diseases network and genes-drugs network also play important roles in the interaction between the 2 diseases. Interaction between COVID-19 and BD exists. ACTB, ASPM, CCNA2, CCNB1, and CENPE as potential biomarkers for 2 diseases.

摘要

为了探讨 COVID-19 与 Behcet 病(BD)之间的潜在关系并寻找相关生物标志物,我们使用生物信息学方法从 COVID-19 患者的外周血单核细胞(PBMCs)和 BD 患者的 PBMCs 中下载转录组数据,筛选 COVID-19 和 BD 之间的常见差异基因,进行基因本体(GO)和通路分析,并构建蛋白质-蛋白质相互作用(PPI)网络,筛选枢纽基因并进行共表达分析。此外,我们构建了基因-转录因子(TFs)-miRNAs 网络、基因-疾病网络和基因-药物网络,以深入了解这两种疾病之间的相互作用。我们使用 GEO 数据库中的 RNA-seq 数据集(GSE152418、GSE198533)。我们使用交叉分析获得了 461 个上调的常见差异基因和 509 个下调的常见差异基因,映射了 PPI 网络,并使用 Cytohubba 识别了 15 个最相关的基因作为枢纽基因(ACTB、BRCA1、RHOA、CCNB1、ASPM、CCNA2、TOP2A、PCNA、AURKA、KIF20A、MAD2L1、MCM4、BUB1、RFC4 和 CENPE)。我们筛选出具有统计学意义的枢纽基因,发现 ACTB 在 BD 和 COVID-19 中均呈低表达,而 ASPM、CCNA2、CCNB1 和 CENPE 在 BD 中呈低表达,在 COVID-19 中呈高表达。然后进行 GO 分析和通路分析,以获得共同的通路和生物反应过程,这表明 BD 和 COVID-19 之间存在共同的关联。基因-TFs-miRNAs 网络、基因-疾病网络和基因-药物网络也在这两种疾病的相互作用中发挥重要作用。COVID-19 和 BD 之间存在相互作用。ACTB、ASPM、CCNA2、CCNB1 和 CENPE 可能是这两种疾病的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/620f/10194748/48997790bde1/medi-102-e33821-g001.jpg

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