Clinical Laboratory of Integrative Medicine, the First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.
Institute (College) of Integrative Medicine, Dalian Medical University, Dalian, Liaoning, China.
Medicine (Baltimore). 2023 May 19;102(20):e33521. doi: 10.1097/MD.0000000000033521.
Pancreatic adenocarcinoma (PAAD) is one of the most common malignancies worldwide with an increasing incidence and poor outcome due to the lack of effective diagnostic and treatment methods. Emerging evidence implicates that emodin displays extensive spectrum anticancer properties. Differential expression genes in PAAD patients were analyzed by Gene Expression Profiling Interactive Analysis (GEPIA) website, and the targets of emodin were obtained via Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform. Subsequently, enrichment analyses were performed using R software. A protein-protein interaction (PPI) network was constructed by STRING database and Cytoscape software was used to identify the hub genes. Prognostic value and immune infiltration landscapes were explored through Kaplan-Meier plotter (KM plotter) website and the Single-Sample Gene Set Enrichment Analysis package of R. Finally, molecular docking was used to computationally verify the interaction of ligand and receptor proteins. A total of 9191 genes were significantly differentially expressed in PAAD patients and 34 potential targets of emodin were obtained. Intersections of the 2 groups were considered as potential targets of emodin against PAAD. Functional enrichment analyses illustrated that these potential targets were linked to numerous pathological processes. Hub genes identified through PPI networks were correlated with poor prognosis and infiltration level of different immune cells in PAAD patients. Perhaps emodin interacted with the key molecules and regulate the activity of them. We revealed the inherent mechanism of emodin against PAAD with the aid of network pharmacology, which provided reliable evidence and a novel guideline for clinical treatment.
胰腺导管腺癌(PAAD)是世界上最常见的恶性肿瘤之一,由于缺乏有效的诊断和治疗方法,其发病率和预后均较差。新出现的证据表明,大黄素具有广泛的抗癌特性。通过基因表达谱交互分析(GEPIA)网站分析 PAAD 患者的差异表达基因,通过中药系统药理学数据库和分析平台获得大黄素的作用靶点。随后,使用 R 软件进行富集分析。通过 STRING 数据库构建蛋白质-蛋白质相互作用(PPI)网络,使用 Cytoscape 软件识别枢纽基因。通过 Kaplan-Meier plotter(KM plotter)网站和 R 中的单样本基因集富集分析包探索预后价值和免疫浸润景观。最后,通过分子对接计算验证配体和受体蛋白的相互作用。PAAD 患者中有 9191 个基因表达显著差异,得到 34 个大黄素的潜在作用靶点。这 2 组的交集被认为是大黄素针对 PAAD 的潜在作用靶点。功能富集分析表明,这些潜在靶点与许多病理过程有关。通过 PPI 网络识别的枢纽基因与 PAAD 患者预后不良和不同免疫细胞浸润水平相关。大黄素可能与关键分子相互作用,并调节它们的活性。我们借助网络药理学揭示了大黄素对抗 PAAD 的内在机制,为临床治疗提供了可靠的证据和新的指导方针。