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探索 Aβ 肽在水性离子液体溶液界面处的非均相动力学环境。

Exploring the Heterogeneous Dynamical Environment at the Interface of Aβ Peptide in Aqueous Ionic Liquid Solution.

机构信息

Molecular Modeling Laboratory, Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

Centre for Computational and Data Sciences, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.

出版信息

J Phys Chem B. 2023 Jul 6;127(26):5808-5820. doi: 10.1021/acs.jpcb.3c02005. Epub 2023 Jun 22.

Abstract

In this study, we have investigated the heterogeneous dynamical environment around an ensemble of full-length amyloid-β (Aβ) peptide monomers in binary aqueous solution containing the ionic liquid (IL) 1-butyl-3-methylimidazolium tetrafluoroborate [BMIM][BF] as a co-solvent. Atomistic molecular dynamics (MD) simulations have been employed with the aim of understanding the effect of the IL on the distribution of water molecules and IL components around distinct segments of the peptide. As compared to pure aqueous medium, locally heterogeneous restricted water motions at the interface have been spotted in the presence of the IL. Our calculations revealed faster diffusion of water molecules hydrating hydrophilic segments (N-term and turn) as opposed to that around hydrophobic segments (hp1, hp2, and C-term). The extent of non-uniform restriction on the center-of-mass motions as well as the reorientation of water molecules and IL ions have been similarly affected in the binary IL-water solution. The effects of IL on the formation of hydrogen bond networks have been evident from the longer hydrogen bond relaxation time scales of peptide-water, with only a small fraction of peptide-anion hydrogen bonds contributing to the structural relaxation. Due to the size and shape factors, the increasingly sluggish dynamics of the IL components in the solvation shell can be attributed to a longer time scale for the onset of maximum dynamic heterogeneity. Interestingly, the water molecules around the polar segments of the peptide take longer to attain dynamic heterogeneity, which intensifies in the presence of IL. These calculations clearly suggest that electrostatic interaction plays a crucial role in water-mediated peptide-IL interaction, thereby shielding the surface from hydrophobic collapse and preventing possible further growth of the monomers into fibrils at higher peptide concentrations.

摘要

在这项研究中,我们研究了含有离子液体(IL)1-丁基-3-甲基咪唑四氟硼酸盐[BMIM][BF]作为共溶剂的二元水溶液中全长淀粉样β(Aβ)肽单体聚集体周围的异质动力学环境。采用原子分子动力学(MD)模拟的方法,旨在了解 IL 对肽不同片段周围水分子和 IL 成分分布的影响。与纯水溶液相比,在存在 IL 的情况下,界面处的局部异质受限水分子运动已被发现。我们的计算表明,与疏水区段(hp1、hp2 和 C 末端)相比,亲水区段(N 末端和转角)的水分子更快扩散。非均匀限制对质心运动的程度以及水分子和 IL 离子的重定向在二元 IL-水溶剂中也受到类似的影响。从更长的氢键松弛时间尺度来看,氢键网络的形成受 IL 影响明显,其中只有一小部分肽-阴离子氢键对结构松弛有贡献。由于尺寸和形状因素,溶剂化壳中 IL 成分的动力学变得越来越缓慢,可以归因于最大动态异质性开始的时间尺度更长。有趣的是,肽极性片段周围的水分子达到动态异质性的时间更长,在 IL 存在的情况下,这种情况会加剧。这些计算清楚地表明,静电相互作用在水介导的肽-IL 相互作用中起着至关重要的作用,从而使表面免受疏水性塌陷的影响,并防止在较高肽浓度下单体进一步生长成原纤维。

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