Hunt William D, McCarty Nael A, Marin Eduardo Martinez, Westafer Ryan S, Yamin Phillip R, Cui Guiying, Eckford Andrew W, Denison Douglas R
Georgia Institute of Technology, Atlanta, Georgia.
Emory University School of Medicine, Atlanta, Georgia.
Biophys Rep (N Y). 2023 Apr 14;3(2):100108. doi: 10.1016/j.bpr.2023.100108. eCollection 2023 Jun 14.
In this paper we present a transistor circuit model for cystic fibrosis transmembrane conductance regulator (CFTR) that seeks to map the functional form of CFTR both in wild type and mutants. The circuit architecture is configured so that the function, and as much as possible the form, faithfully represents what is known about CFTR from cryo-electron microscopy and molecular dynamics. The model is a mixed analog-digital topology with an AND gate receiving the input from two separate ATP-nucleotide-binding domain binding events. The analog portion of the circuit takes the output from the AND gate as its input. The input to the circuit model and its noise characteristics are extracted from single-channel patch-clamp experiments. The chloride current predicted by the model is then compared with single-channel patch-clamp recordings for wild-type CFTR. We also consider the patch-clamp recordings from CFTR with a G551D point mutation, a clinically relevant mutant that is responsive to therapeutic management. Our circuit model approach enables bioengineering approaches to CFTR and allows biophysicists to use efficient circuit simulation tools to analyze its behavior.
在本文中,我们提出了一种用于囊性纤维化跨膜传导调节因子(CFTR)的晶体管电路模型,该模型旨在描绘野生型和突变体中CFTR的功能形式。电路架构的配置方式使得其功能以及尽可能的形式能够如实地反映从冷冻电子显微镜和分子动力学中所了解到的CFTR情况。该模型是一种混合模拟 - 数字拓扑结构,其中一个与门接收来自两个独立的ATP - 核苷酸结合域结合事件的输入。电路的模拟部分将与门的输出作为其输入。电路模型的输入及其噪声特性是从单通道膜片钳实验中提取的。然后将模型预测的氯离子电流与野生型CFTR的单通道膜片钳记录进行比较。我们还考虑了具有G551D点突变的CFTR的膜片钳记录,该突变体是一种对治疗有反应的临床相关突变体。我们的电路模型方法为CFTR带来了生物工程方法,并允许生物物理学家使用高效的电路模拟工具来分析其行为。