Liao L Y, Liu M, Zhang Y P, Yin Y X, Wei X H, Gao L B, Zhou R
Department of Obstetrics and Gynecology, West China Second University Hospital, Sichuan University; Ministry of Education Key Laboratory of Birth Defects and Related Diseases of Women and Children; National Health Commission Key Laboratory of Chronobiology, Chengdu 610041, China.
Laboratory of Molecular and Translational Medicine, West China Second University Hospital, Sichuan University; Ministry of Education Key Laboratory of Birth Defects and Related Diseases of Women and Children; National Health Commission Key Laboratory of Chronobiology, Chengdu 610041, China.
Zhonghua Fu Chan Ke Za Zhi. 2023 Jun 25;58(6):430-441. doi: 10.3760/cma.j.cn112141-20230206-00044.
To identify the expression profile of circular RNA (circRNA) in placenta of pre-eclampsia (PE) pregnant women by high-throughput sequencing, and to construct the circRNA-microRNA (miRNA)-messenger RNA (mRNA) interaction network, so as to reveal the related pathways and regulatory mechanisms of PE. The clinical data and placentas of 42 women with PE (PE group) and 30 normal pregnant women (control group) who delivered in West China Second University Hospital from November 2019 to June 2021 were collected. (1) High-throughput sequencing was used to establish the differentially expressed circRNA profiles in placental tissues of 5 pairs of PE group and the control group. (2) Real-time quantitative PCR (qRT-PCR) was used to verify the expression levels of 6 differentially expressed circRNAs in placental tissues of PE group and control group. (3) Bioinformatics analysis was used to predict the target miRNA and analyze the co-expressed mRNA to construct a competitive endogenous RNA (ceRNA) network. The differentially expressed circRNAs were analyzed by Gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) pathways. (4) Logistic regression analysis, Pearson correlation and Kendall's tau-b correlation analysis were used to test the correlation between the three differentially expressed circRNAs and the risk of PE and clinical characteristics. (5) circRNA_05393 was selected for subsequent functional study. Small interfering RNA (siRNA) and overexpression plasmid were used to knock down or increase the expression level of circRNA_05393 in trophoblast cell line HTR-8/SVneo cells, respectively. Transwell assay was used to detect the migration and invasion ability of the trophoblasts in vitro. Cell counting kit-8 assay was used to detect the proliferation ability of the trophoblasts. (1) Seventy-two differentially expressed circRNAs were identified by high-throughput sequencing, of which 35 were up-regulated and 37 were down-regulated. (2) qRT-PCR showed that compared with the control group, circRNA_00673 (1.306±0.168 vs 2.059±0.242; =2.356, =0.021) and circRNA_07796 (1.275±0.232 vs 1.954±0.230; =2.018, =0.047) were significantly increased, while circRNA_05393 (1.846±0.377 vs 0.790±0.094; =3.138, =0.002) was significantly decreased. (3) The circRNA-miRNA-mRNA interaction network contained 3 circRNAs, 8 miRNAs and 53 mRNAs. GO functional annotation analysis showed that the biological process was mainly enriched in iron ion homeostasis, membrane depolarization during action potential and neuronal action potential. In terms of cellular components, they were mainly enriched in cytoskeleton and membrane components. In terms of molecular function, they were mainly enriched in the activity of voltage-gated sodium channel and basic amino acid transmembrane transporter. KEGG pathway enrichment analysis showed that mRNAs in the interaction network were mainly enriched in complement and coagulation cascade, glycine, serine and threonine metabolism, p53 signaling pathway and peroxisome proliferators-activated receptors (PPAR) signaling pathway. (4) Logistic regression analysis showed that down-regulation of circRNA_05393 expression was a risk factor for PE (=0.044, 95%: 0.003-0.596; =0.019). Correlation analysis showed that circRNA_05393 was significantly correlated with systolic blood pressure and diastolic blood pressure in PE pregnant women (both <0.05). (5) Knock down or overexpression of circRNA_05393 significantly reduced or increased the migration and invasion abilities of HTR-8/SVneo cells (all <0.05), but had no significant effect on the ability of tube formation and proliferation (all >0.05). The construction of circRNA expression profile in placenta and the exploration of circRNA-miRNA-mRNA interaction network provide the possibility to reveal the regulatory mechanism of specific circRNA involved in PE. Inhibition of circRNA_05393 may induce the progression of PE by reducing the migration and invasion of trophoblasts.
通过高通量测序鉴定子痫前期(PE)孕妇胎盘组织中环状RNA(circRNA)的表达谱,构建circRNA-微小RNA(miRNA)-信使RNA(mRNA)相互作用网络,以揭示PE的相关通路及调控机制。收集2019年11月至2021年6月在四川大学华西第二医院分娩的42例PE孕妇(PE组)和30例正常孕妇(对照组)的临床资料及胎盘组织。(1)采用高通量测序建立PE组和对照组5对胎盘组织中差异表达的circRNA谱。(2)采用实时定量聚合酶链反应(qRT-PCR)验证PE组和对照组胎盘组织中6种差异表达circRNA的表达水平。(3)利用生物信息学分析预测靶miRNA并分析共表达的mRNA,构建竞争性内源RNA(ceRNA)网络。对差异表达的circRNA进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析。(4)采用逻辑回归分析、Pearson相关分析和Kendall's tau-b相关分析检测3种差异表达circRNA与PE风险及临床特征之间的相关性。(5)选择circRNA_05393进行后续功能研究。分别使用小干扰RNA(siRNA)和过表达质粒敲低或上调滋养层细胞系HTR-8/SVneo细胞中circRNA_05393的表达水平。采用Transwell实验检测滋养层细胞的迁移和侵袭能力。使用细胞计数试剂盒-8实验检测滋养层细胞的增殖能力。(1)高通量测序鉴定出72种差异表达的circRNA,其中35种上调,37种下调。(2)qRT-PCR结果显示,与对照组相比,circRNA_00673(1.306±0.168比2.059±0.242;t=2.356,P=0.021)和circRNA_07796(1.275±0.232比1.954±0.230;t=2.018,P=0.047)显著升高,而circRNA_05393(1.846±0.377比0.790±0.094;t=3.138,P=0.002)显著降低。(3)circRNA-miRNA-mRNA相互作用网络包含3种circRNA、8种miRNA和53种mRNA。GO功能注释分析显示,生物学过程主要富集于铁离子稳态、动作电位期间的膜去极化和神经元动作电位;细胞成分主要富集于细胞骨架和膜成分;分子功能主要富集于电压门控钠通道活性和碱性氨基酸跨膜转运蛋白。KEGG通路富集分析显示,相互作用网络中的mRNA主要富集于补体和凝血级联、甘氨酸、丝氨酸和苏氨酸代谢、p53信号通路和过氧化物酶体增殖物激活受体(PPAR)信号通路。(4)逻辑回归分析显示,circRNA_05393表达下调是PE的危险因素(P=0.044,95%CI:0.003-0.596;OR=0.019)。相关性分析显示,circRNA_05393与PE孕妇的收缩压和舒张压显著相关(均P<0.05)。(5)敲低或过表达circRNA_05393显著降低或增加HTR-8/SVneo细胞的迁移和侵袭能力(均P<0.05),但对其成管和增殖能力无显著影响(均P>0.05)。胎盘circRNA表达谱的构建及circRNA-miRNA-mRNA相互作用网络的探索为揭示参与PE的特定circRNA的调控机制提供了可能。抑制circRNA_05393可能通过降低滋养层细胞的迁移和侵袭能力诱导PE进展。