文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

Computational Characterization of the Binding Properties of the HIV1-Neutralizing Antibody PG16 and Design of PG16-Derived CDRH3 Peptides.

作者信息

Deubler Manuel, Weißenborn Lucas, Leukel Simon, Horn Anselm H C, Eichler Jutta, Sticht Heinrich

机构信息

Division of Bioinformatics, Institute of Biochemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), 91054 Erlangen, Germany.

Department of Chemistry and Pharmacy, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), 91058 Erlangen, Germany.

出版信息

Biology (Basel). 2023 Jun 6;12(6):824. doi: 10.3390/biology12060824.


DOI:10.3390/biology12060824
PMID:37372110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10295463/
Abstract

PG16 is a broadly neutralizing antibody that binds to the gp120 subunit of the HIV-1 Env protein. The major interaction site is formed by the unusually long complementarity determining region (CDR) H3. The CDRH3 residue Tyr100H is known to represent a tyrosine sulfation site; however, this modification is not present in the experimental complex structure of PG16 with full-length HIV-1 Env. To investigate the role of sulfation for this complex, we modeled the sulfation of Tyr100H and compared the dynamics and energetics of the modified and unmodified complex by molecular dynamics simulations at the atomic level. Our results show that sulfation does not affect the overall conformation of CDRH3, but still enhances gp120 interactions both at the site of modification and for the neighboring residues. This stabilization affects not only protein-protein contacts, but also the interactions between PG16 and the gp120 glycan shield. Furthermore, we also investigated whether PG16-CDRH3 is a suitable template for the development of peptide mimetics. For a peptide spanning residues 93-105 of PG16, we obtained an experimental EC value of 3nm for the binding of gp120 to the peptide. This affinity can be enhanced by almost one order of magnitude by artificial disulfide bonding between residues 99 and 100F. In contrast, any truncation results in significantly lower affinity, suggesting that the entire peptide segment is involved in gp120 recognition. Given their high affinity, it should be possible to further optimize the PG16-derived peptides as potential inhibitors of HIV invasion.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/df0030d413e9/biology-12-00824-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/ef4d7149b5c2/biology-12-00824-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/6e83eb479403/biology-12-00824-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/3eb1491b8a38/biology-12-00824-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/c0a838f33977/biology-12-00824-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/cdea17c96dc5/biology-12-00824-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/f7926412b9a3/biology-12-00824-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/e8e5e5f2989c/biology-12-00824-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/2e5394aaae30/biology-12-00824-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/df0030d413e9/biology-12-00824-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/ef4d7149b5c2/biology-12-00824-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/6e83eb479403/biology-12-00824-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/3eb1491b8a38/biology-12-00824-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/c0a838f33977/biology-12-00824-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/cdea17c96dc5/biology-12-00824-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/f7926412b9a3/biology-12-00824-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/e8e5e5f2989c/biology-12-00824-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/2e5394aaae30/biology-12-00824-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f936/10295463/df0030d413e9/biology-12-00824-g009.jpg

相似文献

[1]
Computational Characterization of the Binding Properties of the HIV1-Neutralizing Antibody PG16 and Design of PG16-Derived CDRH3 Peptides.

Biology (Basel). 2023-6-6

[2]
Structure and function of broadly reactive antibody PG16 reveal an H3 subdomain that mediates potent neutralization of HIV-1.

Proc Natl Acad Sci U S A. 2010-6-2

[3]
Effects of a remote mutation from the contact paratope on the structure of CDR-H3 in the anti-HIV neutralizing antibody PG16.

Sci Rep. 2019-12-27

[4]
Trimeric gp120-specific bovine monoclonal antibodies require cysteine and aromatic residues in CDRH3 for high affinity binding to HIV Env.

MAbs. 2017-4

[5]
Potent and broad anti-HIV-1 activity exhibited by a glycosyl-phosphatidylinositol-anchored peptide derived from the CDR H3 of broadly neutralizing antibody PG16.

J Virol. 2011-6-29

[6]
Hyperglycosylated stable core immunogens designed to present the CD4 binding site are preferentially recognized by broadly neutralizing antibodies.

J Virol. 2014-12

[7]
Binding interactions between soluble HIV envelope glycoproteins and quaternary-structure-specific monoclonal antibodies PG9 and PG16.

J Virol. 2011-5-4

[8]
Crystal structure of PG16 and chimeric dissection with somatically related PG9: structure-function analysis of two quaternary-specific antibodies that effectively neutralize HIV-1.

J Virol. 2010-6-10

[9]
Conformational Engineering of HIV-1 Env Based on Mutational Tolerance in the CD4 and PG16 Bound States.

J Virol. 2019-5-15

[10]
Ablation of the complementarity-determining region H3 apex of the anti-HIV-1 broadly neutralizing antibody 2F5 abrogates neutralizing capacity without affecting core epitope binding.

J Virol. 2010-2-10

引用本文的文献

[1]
Tyrosine Sulfation at Antibody Light Chain CDR-1 Increases Binding Affinity and Neutralization Potency to Interleukine-4.

Int J Mol Sci. 2024-2-5

本文引用的文献

[1]
Sulfotyrosine residues: Interaction specificity determinants for extracellular protein-protein interactions.

J Biol Chem. 2022-8

[2]
Smaller, Stronger, More Stable: Peptide Variants of a SARS-CoV-2 Neutralizing Miniprotein.

Int J Mol Sci. 2022-6-4

[3]
Tyrosine O-sulfation proteoforms affect HIV-1 monoclonal antibody potency.

Sci Rep. 2022-5-19

[4]
Effect of Ions and Sequence Variants on the Antagonist Binding Properties of the Histamine H Receptor.

Int J Mol Sci. 2022-1-26

[5]
Variability in the Glycosylation Patterns of gp120 Proteins from Different Human Immunodeficiency Virus Type 1 Isolates Expressed in Different Host Cells.

J Proteome Res. 2021-10-1

[6]
Broadly Neutralizing Antibodies for HIV-1 Prevention.

Front Immunol. 2021

[7]
Advancing HIV Broadly Neutralizing Antibodies: From Discovery to the Clinic.

Front Public Health. 2021

[8]
Essential functional molecules associated with SARS-CoV-2 infection: Potential therapeutic targets for COVID-19.

Gene. 2021-2-5

[9]
Cryo-EM Structure of Full-length HIV-1 Env Bound With the Fab of Antibody PG16.

J Mol Biol. 2020-1-11

[10]
Effects of a remote mutation from the contact paratope on the structure of CDR-H3 in the anti-HIV neutralizing antibody PG16.

Sci Rep. 2019-12-27

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索