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从连接囊泡实验数据估计新月形曲率诱导蛋白的各向异性弯曲刚度和自发曲率。

Estimation of anisotropic bending rigidities and spontaneous curvatures of crescent curvature-inducing proteins from tethered-vesicle experimental data.

机构信息

Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan.

Universitat Politèdcnica de Catalunya-BarcelonaTech, 08034 Barcelona, Spain.

出版信息

Soft Matter. 2023 Jul 19;19(28):5300-5310. doi: 10.1039/d3sm00340j.

DOI:10.1039/d3sm00340j
PMID:37401831
Abstract

The Bin/amphiphysin/Rvs (BAR) superfamily proteins have a crescent binding domain and bend biomembranes along the domain axis. However, their anisotropic bending rigidities and spontaneous curvatures have not been experimentally determined. Here, we estimated these values from the bound protein densities on tethered vesicles using a mean-field theory of anisotropic bending energy and orientation-dependent excluded volume. The dependence curves of the protein density on the membrane curvature are fitted to the experimental data for the I-BAR and N-BAR domains reported by C. Prévost ., 2015, 6, 8529 and F.-C. Tsai , 2021, 17, 4254-4265, respectively. For the I-BAR domain, all three density curves of different chemical potentials exhibit excellent fits with a single parameter set of anisotropic bending energy. When the classical isotropic bending energy is used instead, one of the curves can be fitted well, but the others exhibit large deviations. In contrast, for the N-BAR domain, two curves are not well fitted simultaneously the anisotropic model, although it is significantly improved compared to the isotropic model. This deviation likely suggests a cluster formation of the N-BAR domains.

摘要

Bin/ amphiphysin/Rvs (BAR) 超家族蛋白具有新月形结合域,并沿域轴弯曲生物膜。然而,它们各向异性的弯曲刚度和自发曲率尚未通过实验确定。在这里,我们使用各向异性弯曲能量和取向相关排斥体积的平均场理论,从连接囊泡上的结合蛋白密度来估计这些值。我们将蛋白密度对膜曲率的依赖关系曲线拟合到 C. Prévost 报道的 I-BAR 和 N-BAR 结构域的实验数据中,分别为 2015 年 6 月发表的 6,8529 号和 2021 年 17 月发表的 4254-4265 号。对于 I-BAR 结构域,不同化学势的所有三条密度曲线都与各向异性弯曲能量的单个参数集表现出极好的拟合。当使用经典各向同性弯曲能时,虽然其中一条曲线可以很好地拟合,但其他曲线则存在较大偏差。相比之下,对于 N-BAR 结构域,尽管与各向同性模型相比有显著改善,但两条曲线无法同时很好地拟合各向异性模型。这种偏差可能表明 N-BAR 结构域形成了聚集体。

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