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HMOX1 GT(n) 重复序列在欧洲人群中的表型关联。

Phenotypic Associations With the HMOX1 GT(n) Repeat in European Populations.

出版信息

Am J Epidemiol. 2024 May 7;193(5):718-726. doi: 10.1093/aje/kwad154.

DOI:10.1093/aje/kwad154
PMID:37414746
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11074708/
Abstract

Heme oxygenase 1 is a key enzyme in the management of heme in humans. A GT(n) repeat length in the heme oxygenase 1 gene (HMOX1) has been widely associated with a variety of phenotypes, including susceptibility to and outcomes in diabetes, cancer, infections, and neonatal jaundice. However, studies have generally been small and results inconsistent. In this study, we imputed the GT(n) repeat length in participants from 2 UK cohort studies (the UK Biobank study (n = 463,005; recruited in 2006-2010) and the Avon Longitudinal Study of Parents and Children (ALSPAC; n = 937; recruited in 1990-1991)), with the reliability of imputation tested in other cohorts (1000 Genomes Project, Human Genome Diversity Project, and Personal Genome Project UK). Subsequently, we measured the relationship between repeat length and previously identified associations (diabetes, chronic obstructive pulmonary disease, pneumonia, and infection-related mortality in the UK Biobank; neonatal jaundice in ALSPAC) and performed a phenomewide association study in the UK Biobank. Despite high-quality imputation (correlation between true repeat length and imputed repeat length > 0.9 in test cohorts), clinical associations were not identified in either the phenomewide association study or specific association studies. These findings were robust to definitions of repeat length and sensitivity analyses. Despite multiple smaller studies identifying associations across a variety of clinical settings, we could not replicate or identify any relevant phenotypic associations with the HMOX1 GT(n) repeat.

摘要

血红素加氧酶 1 是人类血红素管理的关键酶。血红素加氧酶 1 基因(HMOX1)中的 GT(n) 重复长度与多种表型广泛相关,包括糖尿病、癌症、感染和新生儿黄疸的易感性和结局。然而,这些研究通常规模较小,结果不一致。在这项研究中,我们对来自 2 个英国队列研究(英国生物库研究(n=463,005;2006-2010 年招募)和雅芳纵向父母和儿童研究(ALSPAC;n=937;1990-1991 年招募)的参与者进行了 GT(n) 重复长度的推断,通过在其他队列(1000 基因组计划、人类基因组多样性计划和英国个人基因组计划)中进行推断可靠性测试。随后,我们测量了重复长度与先前确定的关联(英国生物库中的糖尿病、慢性阻塞性肺疾病、肺炎和感染相关死亡率;ALSPAC 中的新生儿黄疸)之间的关系,并在英国生物库中进行了全基因组关联研究。尽管高质量的推断(测试队列中真实重复长度与推断重复长度之间的相关性>0.9),但在全基因组关联研究或特定关联研究中均未发现临床关联。这些发现对于重复长度的定义和敏感性分析都是稳健的。尽管有多个较小的研究在多种临床环境中确定了关联,但我们无法复制或确定 HMOX1 GT(n) 重复与任何相关表型之间的关联。

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PLoS One. 2022 May 12;17(5):e0267399. doi: 10.1371/journal.pone.0267399. eCollection 2022.
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