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相分离蛋白的序列变异及生物分子凝聚物研究资源

Sequence variations of phase-separating proteins and resources for studying biomolecular condensates.

机构信息

Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China.

Key Laboratory for Neuroscience, Ministry of Education/National Health Commission of China, Peking University, Beijing 100191, China.

出版信息

Acta Biochim Biophys Sin (Shanghai). 2023 Jul 18;55(7):1119-1132. doi: 10.3724/abbs.2023131.

Abstract

Phase separation (PS) is an important mechanism underlying the formation of biomolecular condensates. Physiological condensates are associated with numerous biological processes, such as transcription, immunity, signaling, and synaptic transmission. Changes in particular amino acids or segments can disturb the protein's phase behavior and interactions with other biomolecules in condensates. It is thus presumed that variations in the phase-separating-prone domains can significantly impact the properties and functions of condensates. The dysfunction of condensates contributes to a number of pathological processes. Pharmacological perturbation of these condensates is proposed as a promising way to restore physiological states. In this review, we characterize the variations observed in PS proteins that lead to aberrant biomolecular compartmentalization. We also showcase recent advancements in bioinformatics of membraneless organelles (MLOs), focusing on available databases useful for screening PS proteins and describing endogenous condensates, guiding researchers to seek the underlying pathogenic mechanisms of biomolecular condensates.

摘要

相分离(PS)是生物分子凝聚物形成的重要机制。生理凝聚物与许多生物过程有关,如转录、免疫、信号转导和突触传递。特定氨基酸或片段的变化会干扰蛋白质的相行为以及与凝聚物中其他生物分子的相互作用。因此,可以假定相分离倾向结构域的变化会显著影响凝聚物的性质和功能。凝聚物的功能障碍会导致许多病理过程。这些凝聚物的药理学扰动被认为是恢复生理状态的一种有前途的方法。在这篇综述中,我们描述了导致异常生物分子区室化的 PS 蛋白的变化。我们还展示了膜细胞器(MLO)生物信息学的最新进展,重点介绍了用于筛选 PS 蛋白和描述内源性凝聚物的可用数据库,指导研究人员寻找生物分子凝聚物的潜在致病机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9a4c/10423696/68a0ebc30c42/ABBS-2023-182-t1.jpg

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