State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
School of Pharmaceutical Science and Yunnan Key Laboratory of Pharmacology for Natural Products, Kunming Medical University, Kunming, 650500, PR China.
J Mol Graph Model. 2023 Nov;124:108567. doi: 10.1016/j.jmgm.2023.108567. Epub 2023 Jul 14.
Phosphodiesterase-4, the primary enzyme responsible for cAMP degradation in the majority of immune and inflammatory cells, plays a critical role in the regulation of intracellular cAMP levels. Consequently, small molecular entities capable of inhibiting PDE4 have been employed in the treatment of inflammation-associated disorders, such as chronic obstructive pulmonary disease (COPD), psoriasis, atopic dermatitis (AD), inflammatory bowel diseases (IBD), rheumatic arthritis (RA). In the present investigation, a multi-faceted approach was employed to identify novel PDE4 inhibitors, utilizing the co-crystallization structure of PDE4B available in the Protein Data Bank (PDB) database, drug-like screening, false positive filtration, similarity and ADMET screen, as well as molecular docking via multiple software platforms, in conjunction with bioactivity assays. A thiazol-3-propanamides derivative, designated MR9, was discovered to inhibit PDE4B activity with IC values of 2.12 μM and suppress cellular inflammatory factor TNF-α release with an EC value of 3.587 μM. These findings suggest that the innovative active scaffold of MR9 offers a promising foundation for further structural refinement aimed at developing more potent PDE4 inhibitors.
磷酸二酯酶-4(PDE4)是大多数免疫和炎症细胞中 cAMP 降解的主要酶,在调节细胞内 cAMP 水平方面发挥着关键作用。因此,能够抑制 PDE4 的小分子物质已被用于治疗与炎症相关的疾病,如慢性阻塞性肺疾病(COPD)、银屑病、特应性皮炎(AD)、炎症性肠病(IBD)、风湿性关节炎(RA)。在本研究中,采用多方面的方法来鉴定新型 PDE4 抑制剂,利用蛋白数据库(PDB)中 PDE4B 的共结晶结构、药物样筛选、假阳性过滤、相似性和 ADMET 筛选以及通过多个软件平台进行分子对接,结合生物活性测定。发现一种噻唑-3-丙酰胺衍生物,命名为 MR9,可抑制 PDE4B 活性,IC 值为 2.12 μM,并抑制细胞炎症因子 TNF-α的释放,EC 值为 3.587 μM。这些发现表明,MR9 的创新活性骨架为进一步的结构优化提供了有希望的基础,旨在开发更有效的 PDE4 抑制剂。