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通过虚拟筛选和生物评估发现 2-(甲基羰基氨基)噻唑为 PDE4 抑制剂。

Discovery of 2-(Methylcarbonylamino) thiazole as PDE4 inhibitors via virtual screening and biological evaluation.

机构信息

State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.

School of Pharmaceutical Science and Yunnan Key Laboratory of Pharmacology for Natural Products, Kunming Medical University, Kunming, 650500, PR China.

出版信息

J Mol Graph Model. 2023 Nov;124:108567. doi: 10.1016/j.jmgm.2023.108567. Epub 2023 Jul 14.

DOI:10.1016/j.jmgm.2023.108567
PMID:37481883
Abstract

Phosphodiesterase-4, the primary enzyme responsible for cAMP degradation in the majority of immune and inflammatory cells, plays a critical role in the regulation of intracellular cAMP levels. Consequently, small molecular entities capable of inhibiting PDE4 have been employed in the treatment of inflammation-associated disorders, such as chronic obstructive pulmonary disease (COPD), psoriasis, atopic dermatitis (AD), inflammatory bowel diseases (IBD), rheumatic arthritis (RA). In the present investigation, a multi-faceted approach was employed to identify novel PDE4 inhibitors, utilizing the co-crystallization structure of PDE4B available in the Protein Data Bank (PDB) database, drug-like screening, false positive filtration, similarity and ADMET screen, as well as molecular docking via multiple software platforms, in conjunction with bioactivity assays. A thiazol-3-propanamides derivative, designated MR9, was discovered to inhibit PDE4B activity with IC values of 2.12 μM and suppress cellular inflammatory factor TNF-α release with an EC value of 3.587 μM. These findings suggest that the innovative active scaffold of MR9 offers a promising foundation for further structural refinement aimed at developing more potent PDE4 inhibitors.

摘要

磷酸二酯酶-4(PDE4)是大多数免疫和炎症细胞中 cAMP 降解的主要酶,在调节细胞内 cAMP 水平方面发挥着关键作用。因此,能够抑制 PDE4 的小分子物质已被用于治疗与炎症相关的疾病,如慢性阻塞性肺疾病(COPD)、银屑病、特应性皮炎(AD)、炎症性肠病(IBD)、风湿性关节炎(RA)。在本研究中,采用多方面的方法来鉴定新型 PDE4 抑制剂,利用蛋白数据库(PDB)中 PDE4B 的共结晶结构、药物样筛选、假阳性过滤、相似性和 ADMET 筛选以及通过多个软件平台进行分子对接,结合生物活性测定。发现一种噻唑-3-丙酰胺衍生物,命名为 MR9,可抑制 PDE4B 活性,IC 值为 2.12 μM,并抑制细胞炎症因子 TNF-α的释放,EC 值为 3.587 μM。这些发现表明,MR9 的创新活性骨架为进一步的结构优化提供了有希望的基础,旨在开发更有效的 PDE4 抑制剂。

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引用本文的文献

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Phosphodiesterase 4B (PDE4B) inhibitors and their applications in recent years (2014 to early 2025).磷酸二酯酶4B(PDE4B)抑制剂及其近年来(2014年至2025年初)的应用。
Mol Divers. 2025 Jun 14. doi: 10.1007/s11030-025-11242-2.