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金黄色葡萄球菌中涉及氟喹诺酮类药物耐药发展的基因组改变。

Genomic alterations involved in fluoroquinolone resistance development in Staphylococcus aureus.

机构信息

School of Biotechnology, International University, Ho Chi Minh City, Vietnam.

Research Center for Infectious Diseases, International University, Ho Chi Minh City, Vietnam.

出版信息

PLoS One. 2023 Jul 26;18(7):e0287973. doi: 10.1371/journal.pone.0287973. eCollection 2023.

Abstract

AIM

Fluoroquinolone (FQ) is a potent antibiotic class. However, resistance to this class emerges quickly which hinders its application. In this study, mechanisms leading to the emergence of multidrug-resistant (MDR) Staphylococcus aureus (S. aureus) strains under FQ exposure were investigated.

METHODOLOGY

S. aureus ATCC 29213 was serially exposed to ciprofloxacin (CIP), ofloxacin (OFL), or levofloxacin (LEV) at sub-minimum inhibitory concentrations (sub-MICs) for 12 days to obtain S. aureus -1 strains and antibiotic-free cultured for another 10 days to obtain S. aureus-2 strains. The whole genome (WGS) and target sequencing were applied to analyze genomic alterations; and RT-qPCR was used to access the expressions of efflux-related genes, alternative sigma factors, and genes involved in FQ resistance.

RESULTS

A strong and irreversible increase of MICs was observed in all applied FQs (32 to 128 times) in all S. aureus-1 and remained 16 to 32 times in all S. aureus-2. WGS indicated 10 noticeable mutations occurring in all FQ-exposed S. aureus including 2 insdel mutations in SACOL0573 and rimI; a synonymous mutation in hslO; and 7 missense mutations located in an untranslated region. GrlA, was found mutated (R570H) in all S. aureus-1 and -2. Genes encoding for efflux pumps and their regulator (norA, norB, norC, and mgrA); alternative sigma factors (sigB and sigS); acetyltransferase (rimI); methicillin resistance (fmtB); and hypothetical protein BJI72_0645 were overexpressed in FQ-exposed strains.

CONCLUSION

The emergence of MDR S. aureus was associated with the mutations in the FQ-target sequences and the overexpression of efflux pump systems and their regulators.

摘要

目的

氟喹诺酮(FQ)是一种强效抗生素。然而,该类抗生素很快出现耐药性,从而阻碍了其应用。本研究旨在探讨 FQ 暴露下耐多药金黄色葡萄球菌(S. aureus)菌株产生的机制。

方法

将金黄色葡萄球菌 ATCC 29213 连续暴露于环丙沙星(CIP)、氧氟沙星(OFL)或左氧氟沙星(LEV)的亚最小抑菌浓度(sub-MIC)下 12 天,获得 S. aureus-1 株,然后在无抗生素培养物中再培养 10 天,获得 S. aureus-2 株。应用全基因组(WGS)和靶向测序分析基因组变化;并采用 RT-qPCR 检测外排相关基因、替代σ因子和 FQ 耐药基因的表达。

结果

所有应用的 FQ(32 至 128 倍)在所有 S. aureus-1 中均观察到 MIC 显著且不可逆增加,在所有 S. aureus-2 中仍为 16 至 32 倍。WGS 表明,所有 FQ 暴露的金黄色葡萄球菌中均发生了 10 个明显突变,包括 SACOL0573 中 2 个插入缺失突变和 rimI;hslO 中同义突变;以及 7 个位于非翻译区的错义突变。在所有 S. aureus-1 和 -2 中均发现 GrlA 突变(R570H)。编码外排泵及其调节剂(norA、norB、norC 和 mgrA)、替代σ因子(sigB 和 sigS)、乙酰基转移酶(rimI)、甲氧西林耐药(fmtB)和假定蛋白 BJI72_0645 的基因在 FQ 暴露菌株中过度表达。

结论

MDR S. aureus 的出现与 FQ 靶序列突变以及外排泵系统及其调节剂过度表达有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/805a/10370734/754497c89ccd/pone.0287973.g001.jpg

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