Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia; Department of Functioning of Living Systems, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.
Petersburg Nuclear Physics Institute, NRC Kurchatov Institute, Gatchina, Russia; NRC Kurchatov Institute, Moscow, Russia.
J Biol Chem. 2022 May;298(5):101914. doi: 10.1016/j.jbc.2022.101914. Epub 2022 Apr 7.
N-terminal acetylation is widespread in the eukaryotic proteome but in bacteria is restricted to a small number of proteins mainly involved in translation. It was long known that elongation factor Tu (EF-Tu) is N-terminally acetylated, whereas the enzyme responsible for this process was unclear. Here, we report that RimI acetyltransferase, known to modify ribosomal protein S18, is likewise responsible for N-acetylation of the EF-Tu. With the help of inducible tufA expression plasmid, we demonstrated that the acetylation does not alter the stability of EF-Tu. Binding of aminoacyl tRNA to the recombinant EF-Tu in vitro was found to be unaffected by the acetylation. At the same time, with the help of fast kinetics methods, we demonstrate that an acetylated variant of EF-Tu more efficiently accelerates A-site occupation by aminoacyl-tRNA, thus increasing the efficiency of in vitro translation. Finally, we show that a strain devoid of RimI has a reduced growth rate, expanded to an evolutionary timescale, and might potentially promote conservation of the acetylation mechanism of S18 and EF-Tu. This study increased our understanding of the modification of bacterial translation apparatus.
N-端乙酰化在真核生物蛋白质组中广泛存在,但在细菌中仅限于少数主要参与翻译的蛋白质。长期以来,人们一直知道延伸因子 Tu(EF-Tu)被 N-端乙酰化,而负责这一过程的酶尚不清楚。在这里,我们报告说,修饰核糖体蛋白 S18 的 RimI 乙酰转移酶同样负责 EF-Tu 的 N-乙酰化。借助可诱导的 tufA 表达质粒,我们证明乙酰化不会改变 EF-Tu 的稳定性。体外重组 EF-Tu 与氨酰 tRNA 的结合不受乙酰化的影响。同时,借助快速动力学方法,我们证明乙酰化变体的 EF-Tu 更有效地加速氨酰-tRNA 占据 A 位,从而提高体外翻译的效率。最后,我们表明缺乏 RimI 的菌株的生长速度降低,扩展到进化时间尺度,并且可能潜在地促进 S18 和 EF-Tu 的乙酰化机制的保守。这项研究增加了我们对细菌翻译装置修饰的理解。