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核糖体蛋白 S18 乙酰转移酶 RimI 负责延伸因子 Tu 的乙酰化。

Ribosomal protein S18 acetyltransferase RimI is responsible for the acetylation of elongation factor Tu.

机构信息

Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia; Department of Functioning of Living Systems, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.

Petersburg Nuclear Physics Institute, NRC Kurchatov Institute, Gatchina, Russia; NRC Kurchatov Institute, Moscow, Russia.

出版信息

J Biol Chem. 2022 May;298(5):101914. doi: 10.1016/j.jbc.2022.101914. Epub 2022 Apr 7.

Abstract

N-terminal acetylation is widespread in the eukaryotic proteome but in bacteria is restricted to a small number of proteins mainly involved in translation. It was long known that elongation factor Tu (EF-Tu) is N-terminally acetylated, whereas the enzyme responsible for this process was unclear. Here, we report that RimI acetyltransferase, known to modify ribosomal protein S18, is likewise responsible for N-acetylation of the EF-Tu. With the help of inducible tufA expression plasmid, we demonstrated that the acetylation does not alter the stability of EF-Tu. Binding of aminoacyl tRNA to the recombinant EF-Tu in vitro was found to be unaffected by the acetylation. At the same time, with the help of fast kinetics methods, we demonstrate that an acetylated variant of EF-Tu more efficiently accelerates A-site occupation by aminoacyl-tRNA, thus increasing the efficiency of in vitro translation. Finally, we show that a strain devoid of RimI has a reduced growth rate, expanded to an evolutionary timescale, and might potentially promote conservation of the acetylation mechanism of S18 and EF-Tu. This study increased our understanding of the modification of bacterial translation apparatus.

摘要

N-端乙酰化在真核生物蛋白质组中广泛存在,但在细菌中仅限于少数主要参与翻译的蛋白质。长期以来,人们一直知道延伸因子 Tu(EF-Tu)被 N-端乙酰化,而负责这一过程的酶尚不清楚。在这里,我们报告说,修饰核糖体蛋白 S18 的 RimI 乙酰转移酶同样负责 EF-Tu 的 N-乙酰化。借助可诱导的 tufA 表达质粒,我们证明乙酰化不会改变 EF-Tu 的稳定性。体外重组 EF-Tu 与氨酰 tRNA 的结合不受乙酰化的影响。同时,借助快速动力学方法,我们证明乙酰化变体的 EF-Tu 更有效地加速氨酰-tRNA 占据 A 位,从而提高体外翻译的效率。最后,我们表明缺乏 RimI 的菌株的生长速度降低,扩展到进化时间尺度,并且可能潜在地促进 S18 和 EF-Tu 的乙酰化机制的保守。这项研究增加了我们对细菌翻译装置修饰的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0996/9079301/1f662d8edc59/gr1.jpg

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