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基于生物信息学和机器学习的前列腺增生相关生物标志物的鉴定。

Identification of biomarkers related to prostatic hyperplasia based on bioinformatics and machine learning.

机构信息

Department of Urology, Yongkang first people's Hospital, Yongkang, China.

出版信息

Math Biosci Eng. 2023 May 12;20(7):12024-12038. doi: 10.3934/mbe.2023534.

Abstract

In older adults, benign prostatic hyperplasia (BPH) is the most common cause of lower urinary tract symptoms (LUTS). This study aimed to explore the genes with diagnostic value in patients with BPH, reveal the relationship between the expression of diagnosis-related genes and the immune microenvironment, and provide a reference for molecular diagnosis and immunotherapy of BPH. The combined gene expression data of GSE6099, GSE7307 and GSE119195 in the GEO database were used. The differential expression of autophagy-related genes between BPH patients and healthy controls was obtained by differential analysis. Then the genes related to BPH diagnosis were screened by a machine learning algorithm and verified. Finally, five important genes (IGF1, PSIP1, SLC1A3, SLC2A1 and T1A1) were obtained by random forest (RF) algorithm, and their relationships with the immune microenvironment were discussed. Five genes play an essential role in the occurrence and development of BPH and may become new diagnostic markers of BPH. Among them, immune cells have significant correlation with some genes. The signal transduction of IL-4 mediated by M2 macrophages is closely related to the progress of BPH. There are abundant active mast cells in BPH. The adoption and metastasis of regulatory T cells may be an important method to treat BPH.

摘要

在老年人中,良性前列腺增生(BPH)是下尿路症状(LUTS)最常见的原因。本研究旨在探讨 BPH 患者具有诊断价值的基因,揭示诊断相关基因的表达与免疫微环境之间的关系,为 BPH 的分子诊断和免疫治疗提供参考。本研究使用了 GEO 数据库中 GSE6099、GSE7307 和 GSE119195 的联合基因表达数据。通过差异分析获得 BPH 患者与健康对照之间自噬相关基因的差异表达。然后通过机器学习算法筛选与 BPH 诊断相关的基因,并进行验证。最后,通过随机森林(RF)算法获得了五个重要基因(IGF1、PSIP1、SLC1A3、SLC2A1 和 T1A1),并讨论了它们与免疫微环境的关系。这五个基因在 BPH 的发生和发展中起着重要作用,可能成为 BPH 的新诊断标志物。其中,免疫细胞与某些基因有显著的相关性。M2 巨噬细胞介导的 IL-4 信号转导与 BPH 的进展密切相关。BPH 中有丰富的活性肥大细胞。调节性 T 细胞的摄取和转移可能是治疗 BPH 的重要方法。

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