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单细胞门户:单细胞基因组学数据的交互式家园。

Single Cell Portal: an interactive home for single-cell genomics data.

作者信息

Tarhan Leyla, Bistline Jon, Chang Jean, Galloway Bryan, Hanna Emily, Weitz Eric

机构信息

Broad Institute of MIT and Harvard.

出版信息

bioRxiv. 2023 Jul 17:2023.07.13.548886. doi: 10.1101/2023.07.13.548886.

Abstract

Single-cell omics research has the power to leave a deep impact on modern healthcare. Sharing data widely and freely advances this progress in both the academic and clinical spheres. We developed the Single Cell Portal (SCP) to maximize the impact of this work. SCP enables data sharing, supports dynamic results visualization, and facilitates scientific exploration across a large repository of single-cell datasets. SCP's data contributors maintain full control over how their data are shared and presented, without requiring web development expertise. Finally, SCP supports the entire lifecycle of a research project, from sparking an idea, to fine-tuning the data with collaborators, to sharing results in an accessible and interactive way. This paper highlights the most valuable ways in which SCP helps to advance single-cell research.

摘要

单细胞组学研究有能力对现代医疗保健产生深远影响。广泛且免费地共享数据推动了学术和临床领域的这一进展。我们开发了单细胞门户(SCP)以最大化这项工作的影响力。SCP 实现数据共享,支持动态结果可视化,并促进对大量单细胞数据集存储库的科学探索。SCP的数据贡献者可完全控制其数据的共享和呈现方式,而无需网页开发专业知识。最后,SCP 支持研究项目的整个生命周期,从激发想法,到与合作者微调数据,再到以可访问和交互式的方式共享结果。本文重点介绍了SCP有助于推进单细胞研究的最有价值的方式。

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