Jia Minxue, Sayed Khaled, Kapetanaki Maria G, Dion William, Rosas Lorena, Irfan Saad, Valenzi Eleanor, Mora Ana L, Lafyatis Robert A, Rojas Mauricio, Zhu Bokai, Benos Panayiotis V
Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Joint Carnegie Mellon University-University of Pittsburgh Ph.D. Program in Computational Biology, Pittsburgh, Pennsylvania, USA.
bioRxiv. 2023 Jul 21:2023.07.20.549883. doi: 10.1101/2023.07.20.549883.
The study of aging and its mechanisms, such as cellular senescence, has provided valuable insights into age-related pathologies, thus contributing to their prevention and treatment. The current abundance of high throughput data combined with the surge of robust analysis algorithms has facilitated novel ways of identifying underlying pathways that may drive these pathologies.
With the focus on identifying key regulators of lung aging, we performed comparative analyses of transcriptional profiles of aged versus young human subjects and mice, focusing on the common age-related changes in the transcriptional regulation in lung macrophages, T cells, and B immune cells. Importantly, we validated our findings in cell culture assays and human lung samples.
We identified Lymphoid Enhancer Binding Factor 1 (LEF1) as an important age-associated regulator of gene expression in all three cell types across different tissues and species. Follow-up experiments showed that the differential expression of long and short LEF1 isoforms is a key regulatory mechanism of cellular senescence. Further examination of lung tissue from patients with Idiopathic Pulmonary Fibrosis (IPF), an age-related disease with strong ties to cellular senescence, we demonstrated a stark dysregulation of LEF1.
Collectively, our results suggest that the LEF1 is a key factor of aging, and its differential regulation is associated with human and murine cellular senescence.
对衰老及其机制(如细胞衰老)的研究为与年龄相关的病理学提供了有价值的见解,从而有助于其预防和治疗。当前丰富的高通量数据与强大的分析算法的涌现,促进了识别可能驱动这些病理学的潜在途径的新方法。
以识别肺衰老的关键调节因子为重点,我们对老年与年轻人类受试者及小鼠的转录谱进行了比较分析,重点关注肺巨噬细胞、T细胞和B免疫细胞转录调控中与年龄相关的常见变化。重要的是,我们在细胞培养试验和人类肺样本中验证了我们的发现。
我们确定淋巴增强因子1(LEF1)是不同组织和物种中所有三种细胞类型中与年龄相关的重要基因表达调节因子。后续实验表明,长、短LEF1异构体的差异表达是细胞衰老的关键调节机制。对特发性肺纤维化(IPF)患者的肺组织进行进一步检查,IPF是一种与细胞衰老密切相关的年龄相关疾病,我们发现LEF1存在明显的失调。
总体而言,我们的结果表明LEF1是衰老的关键因素,其差异调节与人类和小鼠细胞衰老相关。