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综合 docking、MD 模拟和网络分析方法揭示了心脏 hERG 激活剂 RPR260243 的作用机制。

Integrated Approach Including Docking, MD Simulations, and Network Analysis Highlights the Action Mechanism of the Cardiac hERG Activator RPR260243.

机构信息

Dipartimento di Ingegneria Meccanica e Aerospaziale, Sapienza Università di Roma, via Eudossiana 18, 00184 Rome, Italy.

Department of Pharmacy and Biotechnology, Alma Mater Studiorum-Università di Bologna, via Belmeloro 6, 40126 Bologna, Italy.

出版信息

J Chem Inf Model. 2023 Aug 14;63(15):4888-4899. doi: 10.1021/acs.jcim.3c00596. Epub 2023 Jul 28.

Abstract

hERG is a voltage-gated potassium channel involved in the heart contraction whose defections are associated with the cardiac arrhythmia Long QT Syndrome type 2. The activator RPR260243 (RPR) represents a possible candidate to pharmacologically treat LQTS2 because it enhances the opening of the channel. However, the molecular detail of its action mechanism remains quite elusive. Here, we address the problem using a combination of docking, molecular dynamics simulations, and network analysis. We show that the drug preferably binds at the interface between the voltage sensor and the pore, enhancing the canonical activation path and determining a whole-structure rearrangement of the channel that slightly impairs inactivation.

摘要

hERG 是一种电压门控钾通道,参与心脏收缩,其缺陷与心脏心律失常长 QT 综合征 2 型有关。激动剂 RPR260243(RPR)代表了一种可能的候选药物,可以通过药理学治疗 LQTS2,因为它可以增强通道的开放。然而,其作用机制的分子细节仍然相当难以捉摸。在这里,我们使用对接、分子动力学模拟和网络分析的组合来解决这个问题。我们表明,该药物优选结合在电压传感器和孔之间的界面上,增强了经典的激活途径,并导致通道的整体结构重排,略微损害失活。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f80d/10428221/ad456e5f03ec/ci3c00596_0002.jpg

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